G222386


Basic Information

Item Value
gene id G222386
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7467431 ~ 7785815 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU252229
AAAACATGATGCATTAATAGATGGGGGGTGAAAACATTTGGAATTTGAAGATCAAGGTAAATTGTATTTAATTTGTCTTCCGGGAAACATGCAAGTATTTTCTGTTGCGTCCGAAGGGCAGTACTAAATGAAAGAAAATGATATTCAAGCAAAATAAGAAAAATTTGGACCTCTTCATCCTGTTCAAAAGTTTTCACCCCCCGACTCTTAATGCATCGTGTTTCCTTCTGAAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCTCAGTTGTCCTCCATGTGAAAAGATGGATCTCAGAATCATTCAGTCACTGTTGTAAAGCGTTCAAATATGCAAAAGATGGTGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU252229 True 363 lncRNA 0.37 2 7467431 7785815

Neighbor

gene id symbol gene type direction distance location
CI01000051_07410144_07439528 MAST3, MAST3B coding downstream 27903 7409463 ~ 7439528 (-)
CI01000051_07403086_07404051 NA coding downstream 62647 7402067 ~ 7404784 (-)
CI01000051_07288569_07296096 ELOVL1B coding downstream 171335 7288085 ~ 7296096 (-)
CI01000051_07218226_07226180 CHRNA4B coding downstream 240705 7218142 ~ 7226726 (-)
CI01000051_06966165_06969998 NA coding downstream 497214 6966093 ~ 6970217 (-)
CI01000051_07836858_07853522 TMEM259 coding upstream 51010 7836825 ~ 7854111 (-)
CI01000051_08087374_08111384 NA coding upstream 301123 8086938 ~ 8111595 (-)
CI01000051_08247858_08254018 NA coding upstream 461828 8247643 ~ 8254266 (-)
CI01000051_08346268_08346909 NA coding upstream 560331 8346146 ~ 8347058 (-)
CI01000051_08354973_08355986 NA coding upstream 569110 8354925 ~ 8356034 (-)
G222379 NA non-coding downstream 5641 7459102 ~ 7461790 (-)
G222378 NA non-coding downstream 8988 7458242 ~ 7458443 (-)
G222370 NA non-coding downstream 91441 7375718 ~ 7375990 (-)
G222262 NA non-coding downstream 96431 7366892 ~ 7371000 (-)
G222363 NA non-coding downstream 110046 7357149 ~ 7357385 (-)
G222287 NA non-coding upstream 4563 7790378 ~ 7844010 (-)
G222289 NA non-coding upstream 33787 7819602 ~ 7867243 (-)
G222502 NA non-coding upstream 94825 7880640 ~ 7880840 (-)
G222519 NA non-coding upstream 173290 7959105 ~ 7959341 (-)
G222524 NA non-coding upstream 213627 7999442 ~ 7999673 (-)
G221840 NA other downstream 1333852 6132773 ~ 6133579 (-)
G221575 NA other downstream 1948607 5513952 ~ 5518824 (-)
G220041 NA other downstream 3309328 4155730 ~ 4158103 (-)
CI01000051_02955633_02960400 SCRN2 other downstream 4505937 2955380 ~ 2961148 (-)
G218861 NA other downstream 4626799 2840270 ~ 2840632 (-)
G222729 NA other upstream 556334 8342149 ~ 8342652 (-)
G222730 NA other upstream 557155 8342970 ~ 8343438 (-)

Expression


Co-expression Network