XLOC_009743 (si:dkey-250k15.10)


Basic Information

Item Value
gene id XLOC_009743
gene name si:dkey-250k15.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11660839 ~ 11680970 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019496
ATGATGGTTTCTCGTGGTTTACTCTGGACTCTGTGGATAGTGGCATGTTTTGGTCAAAGTTTTGGTCAAGATTTTCAGTTGCCTGAGCTGACTAATGGAGCAATAGGAGAAAGTGTCGAGTTAACACCTAATAACTTACCATCAGAGATTGATACAGTTACCTGGCAATTTGGAGCAACTTTTATATTGAGTGGAAACCCTGATACAGCCTCAATAGTCTCAGCATATAAAGACAAAGCCGGTTTTGACAAAAACACTCTTGCTCTGGAGCTCTGGAACCTAAAACTGGAGGATGCTGGATCATACGTTCTGTTTGTGCTTTCTAGTAGTGGAGATCAATTTAGAGGAGAAACTACACTACAGGTGTTCGaaaaaataaattacgTCATGCTCACTGGTCCATATGAACCATTAATTGAAGGTGAATCATCTGCTAACATCACCTCTAAGGGAGACGGCCCCATCACCTCTGTGCAGTGGATGAAAGATAACAGTCCTCTGTCTTCTAGCAGAATCATCTTCTCATCTGATAACAGATCAGTGTCTATCAGTCCAGTGGAGAGATCAGACACTGGAGAATATCAGTGTACATACAGTAACCCTGTCAGCTCTGAGACGGCAAAACTCACCCTGATCATCAACTATGGACCAGAAGGTGTTTCTATTAAGGGTCCAGATATGGTGGATTTAGGGGTTCAAGTATTTCTGTCTTGCACTGCAAATTCTGAACCTTCTGCTTCATTCAGCTGGACATTTAATGGGTCAGACACTGGTGTGACTAGAGACACATTGACCATTGATAAGACTGACTTCACACACAGTGGAGAATACATCTGTACAGCCATTAATAGAGTCACAAACAGAAGAGAATCACAAAGACATGCTTTACTAGTTCAAGAGGGTGGTGAAGCTGGTTTAGGAGGAGGACTGCCAGCAGGAGCAATAGCTGGGATTGTCATTGGCGTTTTAGTAGCAGTTGGAGGCATCTGTGGTCTTATTGTCTACTTCACAAAAACCAACAAAATAGGACAGGAGCTTGTGAGTAACTTTGcgatttctgtttttattttctcaacaCAACAaagttttattctatttattaaatGA
>TCONS_00019497
CTGGACTCTGTGGATAGTGGCATGTTTTGGTCAAAGTTTTGGTCAAGATTTTCAGTTGCCTGAGCTGACTAATGGAGCAATAGGAGAAAGTGTCGAGTTAACACCTAATAACTTACCATCAGAGATTGATACAGTTACCTGGCAATTTGGAGCAACTTTTATATTGAGTGGAAACCCTGATACAGCCTCAATAGTCTCAGCATATAAAGACAAAGCCGGTTTTGACAAAAACACTCTTGCTCTGGAGCTCTGGAACCTAAAACTGGAGGATGCTGGATCATACGTTCTGTTTGTGCTTTCTAGTAGTGGAGATCAATTTAGAGGAGAAACTACACTACAGGTGTTCGaaaaaataaattacgTCATGCTCACTGGTCCATATGAACCATTAATTGAAGGTGAATCATCTGCTAACATCACCTCTAAGGGAGACGGCCCCATCACCTCTGTGCAGTGGATGAAAGATAACAGTCCTCTGTCTTCTAGCAGAATCATCTTCTCATCTGATAACAGATCAGTGTCTATCAGTCCAGTGGAGAGATCAGACACTGGAGAATATCAGTGTACATACAGTAACCCTGTCAGCTCTGAGACGGCAAAACTCACCCTGATCATCAACTATGGACCAGAAGGTGTTTCTATTAAGGGTCCAGATATGGTGGATTTAGGGGTTCAAGTATTTCTGTCTTGCACTGCAAATTCTGAACCTTCTGCTTCATTCAGCTGGACATTTAATGGGTCAGACACTGGTGTGACTAGAGACACATTGACCATTGATAAGACTGACTTCACACACAGTGGAGAATACATCTGTACAGCCATTAATAGAGTCACAAACAGAAGAGAATCACAAAGACATGCTTTACTAGTTCAAGCTGGTTTAGGAGGAGGACTGCCAGCAGGAGCAATAGCTGGGATTGTCATTGGCGTTTTAGTAGCAGTTGGAGGCATCTGTGGTCTTATTGTCTACTTCACAAAAACCAACAAAATCCCAACCCAAAGACTTCAACACAAAGGACAAGCAAGTGGAGCAGCACAAAGAGGACAGGAGCTTGACTTGCACTATGAAGAAATCACTGATTCCCAGAGGGCCAGAGAAAATTTTAATCTGGAGAACATTA

Function

symbol description
si:dkey-250k15.10 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100921-41 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000092520

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019496 False 1107 mRNA 0.41 6 11660839 11677537
TCONS_00019497 True 1121 mRNA 0.42 8 11660862 11680970

Neighbor

gene id symbol gene type direction distance location
XLOC_009742 si:dkey-250k15.9 coding upstream 7361 11652591 ~ 11653478 (+)
XLOC_009741 cxcr3.1 coding upstream 18830 11623956 ~ 11642009 (+)
XLOC_009740 si:dkey-11o1.3 coding upstream 39288 11603096 ~ 11621551 (+)
XLOC_009739 si:dkey-11o1.7 coding upstream 62392 11597386 ~ 11598447 (+)
XLOC_009738 si:dkey-11o1.6 coding upstream 67294 11585576 ~ 11593545 (+)
XLOC_009744 si:dkey-250k15.7 coding downstream 2578 11683548 ~ 11709759 (+)
XLOC_009745 ceacam1 coding downstream 43260 11724230 ~ 11760596 (+)
XLOC_009746 si:dkey-250k15.4 coding downstream 98564 11779534 ~ 11785286 (+)
XLOC_009747 cxcr3.2 coding downstream 137156 11818126 ~ 11825303 (+)
XLOC_009748 cxcr3.3 coding downstream 153546 11834516 ~ 11840134 (+)
XLOC_009737 NA non-coding upstream 76961 11580652 ~ 11583878 (+)
XLOC_009736 NA non-coding upstream 82432 11573189 ~ 11578407 (+)
XLOC_009733 NA non-coding upstream 283994 11361760 ~ 11376845 (+)
XLOC_009724 NA non-coding upstream 1043153 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1271052 10387719 ~ 10389787 (+)
XLOC_009751 NA non-coding downstream 436661 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 619199 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 699760 12380730 ~ 12380846 (+)
XLOC_009764 NA non-coding downstream 1281990 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 1431294 13112264 ~ 13115609 (+)

Expression


Co-expression Network