XLOC_009746 (si:dkey-250k15.4)


Basic Information

Item Value
gene id XLOC_009746
gene name si:dkey-250k15.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11779534 ~ 11785286 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019503
TCGACCTATGAGATAACATTAAACTCCGATTAACGCCATATGGACGTCACATTAAACGAATTTCGTTTATAAGTTTGCAAATGTACGTGAAACATTTAAGCATTACTTAATAGCAACTCTCttgacaaaaatatttatttattattatttatctggATGCGCTTTTGATGATTTATGGAAGCACGTTGCCGAGCAACGTAAAGtttGGACACAAAGAATGTTCTTTATTTGAGTCTTAACATGAAGATGAGCCAGCCTTTCACCAAAAGCTTTAAACACAGCTTGCCAAAGACATCCAACGAACAGCACAGTAGCAAAGCCAAGTCTTTGTGCCATAACGTTACAGAAAGCAGCAGCTTGAAAACAGACGTGCTTTGCAACTCTGCACATAAAGTGAGGCGTCTTAAAACCAGGAAGGAGAGGAATCAGATTCGAGGTCAAGAGAGAAACAGGTCTCAGCCATGCCCTCAGAAAAGCAGAAAAGAAGTTGGTGAGAAAGCCCAACGCCACCACATCCATCCAATGTCTGGTTCTAGAAATGAGAGGCCATTCGCCAAGCCATTCATCCTCCAGAAGCCAAGCATCATAACTGAGGGACGCCTTACCTCCATCAAAGGCCTTTTCAGCAATGAGGTTAGGTCGTTGGATATTGAGCGACTGGTGAGCGAACAAATAAAGCAAGATAACCAGAAAAAGGAGCCGAGAAAACAGTCTATGGTGCAAATTAGGTCACAGCTACCTACATTGGTACCTGATTCAGACCAGGACTGCATTCTCAATGATGTACCAGGACCAGAGAACAATTCAACCCCACAAGTGAAGAGGAAAATTTCAAGAAAAGAGCTCACTGGGAAAAGGGGTTTTCAGACTAATAGAAAGTTAGATGCCTCAGTTCCTCTAGCATCATCAAGTGTGGATGGGAAGCATAAAAGAAACACCAGAACTGAAATGGAAGGTAATAATAGCAAAACAAAGCAGAATAGTGCCAAAGAACCTGAACAAGTGATTTTGTCATCctcagaaaatgaaaatgaacctATTCCCCAGTTATGCTCTACTCCAATTGAAactaacaagcacaactttaatATTTCACAAACAAGCACTCTTAAGACCCCTGATGATGGAAAACATGTTCAGAGATTTGAAGAAATCTCTACAATAGTGGAATTCCCGAACATGGAAGATTTGCAGCCTTTAACCTCTCTATCTGGACTGAGCTCTGGGACTGGACAATTAGCAAACAATGACAAGCAGCAGGAGGAGGAAATGTCAGTGTCTTGTAGAGAAGAAGTAAAAAGGCTGGCTAAACGTTTGTGCTCAGCTTCAGATCTCTATGTGCCAAGCTATCAGCGCTCCCTACTGGATAAGTGTAAGAAGACACTAATGCAGACTTTACAAAAAAGACATAGCTTCCAGTTAAATCACAACCTGCACAGGCTACGTTCATCCTTGAATGGAAAGCAAAAAGCCTCTCAGCCAAGCACAGCACAGACATGTGAAGACCGTTCACCATTTAGCCATGCAGTGGAGATTGAGGATAGGTGTAACATCAGCAACATGCCTATTTGGACAGATAGAGCCGTACGGCAAGATTTCTTGCCAGATCAAGTTCCTCGACATCAGGACAGGGGAATGTCCACCAAGAAACGTAAGGTACAAGAGTGGACGATCTCTTCTCCTCAATTCTTCCTAAAAGAACCACAACAGTCACAGGTGGAGATGTTTGACCAGTGGAGACCAGCTACGTTGTCTCAGGATAGCTTCAGACCTCATCAGCATCCCATCGGACAGCTTTTCAACCAGGACCAGACCTTCACTCAGCATGCCGCACCTATACTCAAAGCCCCAACCTGGGAGGATCATCCTGTAAATCCACATTGCCAGCAGCAGTTCCGCAGCAGAGGGGAGAGTTGGACTAATGTGGATTTAGATCTGTCCAAAATCTCTCAGCAGTTTAGAGAAGACACAGATGTTAATATTGATTCATATCAATTTTATGACAGCAGGAAACAAAGACCAGAAGAAGCTTCTTTTGGAGGATCCAGCTTCTGGTCCCATCAGTCACAAACTCaggatgaaagaaaaaaaacggcTCCTTTCTCGTTCTCAGCATCTTATCTCACAGAGGGATTTCAGTATGAGCCTTTTTTTCGCTGTCCACATCCATCTAACACCCAACGCAGGTCAGAATATCCTAATATGACCTTTTGTCCCAGGTCACAGTCAAACACATTATTTTACCCTCACCTTTTCCTTTAGAGAAGAGTATTGACCAGAGCGAATCATCGCTGGTTCAGCTAAGCAATTATTTGCTTACTGTTTATGTGTGAATAATTTCTTCCCCTTCGCAATActgatttaacttttttattgtttcaaaaaaAACCATCACCTCAACATGTGATTTCAGTTTGGGAGTTCAGCGTGCTCACATTATGTATAGTCATGATTTCTTTAGTGTATACTACTTAAAAGGTAGTGAGAGTGAGTAACTTCTTAATATCTAATCACTCTTTGTGCTGCACAGATATTGAAACCTAGTTTTTGTTGATTCTCCTGCTTATATGGGGTAAGTGTGTTATCTTCAACAAATGATGCTGcttgtatatttatttcttttaggtATTAGTTTAgtcagatttctttaaaatacattttaggctGGACTTTTATTATTTCCACTCAAGTTCAGTATTCTATGAAAAAGGTCACACGATTTTGAGATAATCCTTTAATAAGGCAGTACAAAAttgaaatatttacataaaactaATTTCACAGTTTACATTAGTAAAATTATTTGTAGTaaactaaaatgtaaacattaaaccGTGTAACACtcaaaagtaaacaaacagctaTTTTACATGttgaatttcttattttttagtttatgtaattatttactttttgcaTTATACagctttttttacatatttaccaCAAAAGCATAATAAACATTCAAAGTTTCAG
>TCONS_00019504
CAGCTACATACCGAgttcatttggtaaatattttacaatgaatctgtatttattttaacagtttGGACACAAAGAATGTTCTTTATTTGAGTCTTAACATGAAGATGAGCCAGCCTTTCACCAAAAGCTTTAAACACAGCTTGCCAAAGACATCCAACGAACAGCACAGTAGCAAAGCCAAGTCTTTGTGCCATAACGTTACAGAAAGCAGCAGCTTGAAAACAGACGTGCTTTGCAACTCTGCACATAAAGTGAGGCGTCTTAAAACCAGGAAGGAGAGGAATCAGATTCGAGGTCAAGAGAGAAACAGGTCTCAGCCATGCCCTCAGAAAAGCAGAAAAGAAGTTGGTGAGAAAGCCCAACGCCACCACATCCATCCAATGTCTGGTTCTAGAAATGAGAGGCCATTCGCCAAGCCATTCATCCTCCAGAAGCCAAGCATCATAACTGAGGGACGCCTTACCTCCATCAAAGGCCTTTTCAGCAATGAGGTTAGGTCGTTGGATATTGAGCGACTGGTGAGCGAACAAATAAAGCAAGATAACCAGAAAAAGGAGCCGAGAAAACAGTCTATGGTGCAAATTAGGTCACAGCTACCTACATTGGTACCTGATTCAGACCAGGACTGCATTCTCAATGATGTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-254 No description available

Ensembl:

ensembl_id ENSDARG00000092169

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019503 False 2976 mRNA 0.40 5 11779534 11785286
TCONS_00019504 True 644 mRNA 0.43 2 11779761 11780547

Neighbor

gene id symbol gene type direction distance location
XLOC_009745 ceacam1 coding upstream 18938 11724230 ~ 11760596 (+)
XLOC_009744 si:dkey-250k15.7 coding upstream 69775 11683548 ~ 11709759 (+)
XLOC_009743 si:dkey-250k15.10 coding upstream 98564 11660839 ~ 11680970 (+)
XLOC_009742 si:dkey-250k15.9 coding upstream 126056 11652591 ~ 11653478 (+)
XLOC_009741 cxcr3.1 coding upstream 137525 11623956 ~ 11642009 (+)
XLOC_009747 cxcr3.2 coding downstream 32840 11818126 ~ 11825303 (+)
XLOC_009748 cxcr3.3 coding downstream 49230 11834516 ~ 11840134 (+)
XLOC_009749 p3h3 coding downstream 207212 11992498 ~ 12006828 (+)
XLOC_009750 gnb3a coding downstream 237257 12022543 ~ 12049762 (+)
XLOC_009751 NA coding downstream 332345 12117631 ~ 12139336 (+)
XLOC_009737 NA non-coding upstream 195656 11580652 ~ 11583878 (+)
XLOC_009736 NA non-coding upstream 201127 11573189 ~ 11578407 (+)
XLOC_009733 NA non-coding upstream 402689 11361760 ~ 11376845 (+)
XLOC_009724 NA non-coding upstream 1161848 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1389747 10387719 ~ 10389787 (+)
XLOC_009755 CR388102.1 non-coding downstream 514883 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 595444 12380730 ~ 12380846 (+)
XLOC_009764 NA non-coding downstream 1177674 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 1326978 13112264 ~ 13115609 (+)

Expression


Co-expression Network