XLOC_009748 (cxcr3.3)


Basic Information

Item Value
gene id XLOC_009748
gene name cxcr3.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11834516 ~ 11840134 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019506
GGTTTCGTTTTCAATTCAACTGCATTTTGGACAAGGTTAGCACTAGATGGCGCTGAAAAACCTGCTGAAATCATCACGCTCGATAagctcaaagtttttttttactgtaaaatatatttaggCATAAGCATTTAGAGTGCAGGGCTGGAGTGAACCTACTGAGCTACCCGGATGGGTTAAGAAGACTAAGGAAAAAAAGGACAGAAGAACATCTTCATTACCTTTTTCTACTCTGTACTGTGACTGTGCGTACTGTAAACATTGAGCAACGAACGACCTAATGTACGATTCCCAGCAGATGCGTTACATGACACCAAAGGAAAAGCGACTGCTTACAAAGAACAAAGACAAACAGTGACAAAGAGATTCAAAAACATGGCAGCACCTGTAAGTTCTTTTAAGCTCTTGTCGAAGATAGGATGTATTCTTTTGTTTTAACCATGCAACCTTGTTTACGTTTGCTTGCGCACCCACCCGCTTGATATTCAGAGTTTTTAGACAACAGTTTAACAGCTAAAATGCTCTGTAAACCTAAACATGATAACTTTTTTTCTTAtatcttaaaaaacaacaacagagtgCAATTTTAATCAAACGCATCCGTGTGCGCTTGTCATCGAGAAGATTTGGGGTTTGTGTGTAATTGTATAGCCTGTTGTCAGCTGTTCCGCCAACTGCTTTACTTTCCGTTTCACAACTGTTGCAACATCATGTGAAAACCCAGCATGTGATTgcttttttgtaaagaaaaaaaacactcgTCACTGTTCATAAAGCAGACAATCAGACGCTGATCTCCAGTTTCACACTCACCGTTCATAAGTCTGTTTCTGTTTTAGTCAAACATGGAGGTAGAGCTTCACGGATTGTTTGAGAAAAACAACTCCTTCGACTATGATAATTATGAGAACAAAGAACTGGACTGCCAGTCAAAAGCAGTCTCTGATGCATTGGGGGTCTTCATTCCCATGCTTTACTCTTTGGGGATCTTATTGGGGCTGCTGGGACATGGACTGGTTCTGGCAGTATTGTGGCACAAGTGGCTGAATTGCAGTGTGATGGACATCTTTATCTTTCATTTGAGCTTAATTGACAGTCTTCTGCTGCTCTCAATGCCTCTCTGGGCCGTGGATGCCGTTAAAGGATGGATCATGGGGTCAGGACTCTGCAAACTGGCTGGAGTTCTGTTTAAGATGAATTTCTACTGCAGTATGTTGATGTTGGCCTTCATCAGTGTGGACTGCTACCTGTCCATCGTTCATGGAGTTCAGAAGTTATCTCGTAAAAAGCCCATGGTGGTTCATGGATGTTGTCTGATTATCTGGCTCGTCTGCCTGCTCCTTAGCATCCCAGAATGGATCTTTCTGAAATCCATCAGTGACAGCACAGATCAGGTTAAAGATGAATGCATTTACTTTTATCCAGATGATTCCTGGCATCGTTCCTCACGATTTCCGCATCATGTCATTTTTGGTGTGGGAACTCTTGTGCTGCTGTTTTGTTGTACCTCCATCATGCTGAAGCTTCAACGTGAGTCTATGTGCCAGCAGAAGAAAATGGGCAGAAAAACAGCGATCATTGCAGTCCTAGTGCTGGTTTTTCTCATTTGCTGGACACCCTACAGCATTGCCTTCATCGTGAACACCGGTGCTCGTCCAGTGCACATTGATCCTTTAACAGGAGAGAGTGAATGTGAATGGAGGCAGTGGACAGCTACCAAAATAACAGCCATTTTTGGGCTTCTCCATTGCACTAtcaaccctgttatttacttctgtTTCTCCAAAGAGTTCAGGAGACGCTCACTGGCTGTGATAAAGTTCAATGCTTGTGAATCAAACAATAATGACGGCTCACTTTGGGACTCTACTGCAGTAAATGTTAATACTACTGTCCAGGAGGAGCAAGGTCCACTTCAGCAAGTCAATGAACTTAAACCAAAAGTACAAACCCAGCAGCAGGATACATGAATATGTAAATCATTGACCGAGAGACTCTTTGTTTCtcgtaattttatttattatgcttaTTGTAATCTTCTGCATTGTATTTACAGCAAACTGTATTTAGACATGAGCATTTGATCATTGATATTTGGGTTTGGATTTACTTGAAGGTATTTGTACAGTCATACTGGAAAATCCCCCTCTCGTGATGGAGGGTGGAAAAGCGGGCGACCCGCAGGTCATGGAATTTCTGGATTATTTGGGAATTTGGAAATGTCTATAGcagacattgaaagtcagggaGTTTTATTACATGGTTTTTGTCTGAGTCATGCAATATCagggatttttttgtttgttgtttttaagtttaagtgaagtttatttataaactaatttcaagaggagcacatgcttatgattgatcacagctggtcccacaTTTGCTAATTtaggattcaccaatcagacaattccttaGTCAccataaataccctaagtttagtaccacagccatctttgttttgaaaaatccccccttccaccctttcTGCTCtttctttcctagatgggtggcacggcggccctttggttagcactattgcctcacagcaagaacgtcacggGTTCAAGTCCATACCAAgctagccaacgtttctgtgcaaagtttagatgttctccccgtgctagcgtgggtttcccccggttttctctcaccatccaaaaacatgccatttaagttaattgactaatccaattTGGCACTATAGAAGTGcttctagtaagtagttatctttcCATAACAATCCCTAGATTGTTAGAAGAGGgaaccctgggctcgaggatcttacaagctcagggctctctcccgggacagcaagcCAAACGCGATTtatatcaatcatcagctaagtgtaaaccgTTAAACTGtgtatttaacaaaatgtaatatttttgtagcatgtttttatattgtttattttttttatttttattttttattcaaattgttATGGTTATGCTCTTTTTAGGGCTATTTAAGTGAATTGCAGTCAACAGGCGGTACTTGTTAACATGCAAACATGCCAGAAAAAGGAACATTTCTAATGCGTTACCTACAAAATGACTGCCTCAAAAGCTGGTTGTTTAAAGTAGATGACAGAAAGCTGATATCTTGTGCCGATGGTTATAAGGATCAGAATGTAGCTATAATGTTTGCTAAATAGttgtaattaattgtattttttaagtatAGCCTATGTTAGGTAGCATAAGAGGTCACTTTAAGAATCGAAAATGGCGCAGTGTTTGTGAGCTAAATACTGTTAAGTCTTGATAGCAGAAGCTTGGAttaatcattatttaatgtttaatcaaCGTTATATTACTGTTATAGGCTAATTAATACAGATCGACAAGGCTCTTGAAATTAAATTCAGCCTATTTTTCAGTGTAGCTTTGTTTTGGGCCTCAGCACTGTATCTTGAAAATGATGCCAtgtaatagttatttattatttatcctaaccgttgtgttttgttatttaacTTTAGTACTAAAACCATCTGTAAACAAGTAAGCTTATTAACAATTAAATGTTGGATTTAAAATACTCCCTGTGGCTTGTTTTGTCTGCTTAGTGCTCAGCACAACAGCAGTCTTTTGTTTTTCTCATCATTATAGATAAttgaaattcagctttttagacGATGATAATTAAGGTATTGTGAAAAGTGGGAACCGTGGCCAACTAGAGCACTttgattaattttcattttatcagtgaaattattttattatttttttcatttatttttttaattatttaatttttattgtcacTTTGCAAGTGTTTTGTAAAGAACATACGCATGTGTTCTATAAGCAGTGTCAGATGGATattattaatgtcattatttttgtctgttttggtTGATGGAGCTGTGCCCACTTGTGCCTGTGTGTGTAATGCGTGATCGCACTTCCGTTTGTTTGTGGTCATATAATTCAGCGTTTTTTAAAGAAGGCTCTACTGGTTACCAAGTCTGCATTTGaccaacaaacataaaaaaataaatatcattgcaaaata

Function

symbol description
cxcr3.3 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-34 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000070669

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019506 True 4038 mRNA 0.39 2 11834516 11840134

Neighbor

gene id symbol gene type direction distance location
XLOC_009747 cxcr3.2 coding upstream 9213 11818126 ~ 11825303 (+)
XLOC_009746 si:dkey-250k15.4 coding upstream 49230 11779534 ~ 11785286 (+)
XLOC_009745 ceacam1 coding upstream 73920 11724230 ~ 11760596 (+)
XLOC_009744 si:dkey-250k15.7 coding upstream 124757 11683548 ~ 11709759 (+)
XLOC_009743 si:dkey-250k15.10 coding upstream 153546 11660839 ~ 11680970 (+)
XLOC_009749 p3h3 coding downstream 152364 11992498 ~ 12006828 (+)
XLOC_009750 gnb3a coding downstream 182409 12022543 ~ 12049762 (+)
XLOC_009751 NA coding downstream 277497 12117631 ~ 12139336 (+)
XLOC_009752 tpi1b coding downstream 396205 12236339 ~ 12254994 (+)
XLOC_009753 zgc:92606 coding downstream 425024 12265158 ~ 12276225 (+)
XLOC_009737 NA non-coding upstream 250638 11580652 ~ 11583878 (+)
XLOC_009736 NA non-coding upstream 256109 11573189 ~ 11578407 (+)
XLOC_009733 NA non-coding upstream 457671 11361760 ~ 11376845 (+)
XLOC_009724 NA non-coding upstream 1216830 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1444729 10387719 ~ 10389787 (+)
XLOC_009755 CR388102.1 non-coding downstream 460035 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 540596 12380730 ~ 12380846 (+)
XLOC_009764 NA non-coding downstream 1122826 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 1272130 13112264 ~ 13115609 (+)

Expression


Co-expression Network