XLOC_009749 (p3h3)


Basic Information

Item Value
gene id XLOC_009749
gene name p3h3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11992498 ~ 12006828 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019507
CAAAATATAATCGAACCAATTTTTTCCATAGTTGCTGCAAGCACGTATTCCCtcattcctcctcctcctctctctctctctctctctcactcttctCAGTCTCTCCGTTATGGCGCTACACTCAAACTCAAGCTCTGTATACGTGGCGCTTCTCTTCATTATAAACTATATTTGTATTACTGCAGGCAGTGGATTATCATCAGAGAGTTCATCTGGACTTTTACCCCCTTACGATGAGCTCTACTACCGCGGGGTTCGGGCGTACTTTAGCGAGGATTGGGAGCGCGCGGCGGAGTTTCTGGAGAAATCCATTTCCACCCGATACAAACTCCTGCGGATAAGACGGAAATGTCACGACGAGTGTTTAACAGCAGGAGATGACAAAATATCCGAACAAGacaaaGAGGATATGATTTTCTGGGACCTGGGGGTTCTTGAGTGGATCCAGGTACGAGCTGAGTGTGTGAAGTTCTGCATGAGTCGAAGTGTCTCTCCTGCTGCGCTGCTTCCTGTGTCTTCAGACATTGAGTATGAATTTGGGACACGAAACCCTTACAACTACCTCCAAGTCACCTACTATAAGTTGAATAAAATGACCAAAGCAGCTTCAGCAGCTCACACATTCTTTGTGGCTAACCCGAGTCACCTGGAGATGAGGAACAACATCGAGAAGTACAAGAGGATGTTAGGAGTGAAAGAGGAATTTTTCCAGGACAGAGAAAGAGAGCATGAGCAGCACTGGGAGATGTATGATGCAGCCATTCAAGCGGAGAGCTCGTCTGATTGGCTAAAGGCAGTGAAGATGTGGAaggagtgtgtgaatgagacgcTCAAACAGACTGAAGAGTGCAGAGCGCAGTGTGTGACGGCGCCACGGGTCATTCCTGAAGAGCCCGACACCGTACAGGGCGTTTACGAGAGAGCAGCAGacctctctctctctatgaTGTCATGCCAACAGACGTGTGTGACCTTAGTTTCAACAAGACCTGGAAGGGTTTCTGCCATGGAGGATTTCCTGCCCTTGCAGCTGGAGCACTTACATATTGCACAGTTCAAAGCTGGTGACCTGAAGGGGGCAGTGGAGACCTTGCGCTCCTTACTGCTCTTTTACCCCACAGATTCAGATAATCTGAGTAACCTGGATCTCTACACTCAGACTCTAGAGGGCGACACTGAGGCTCAGCAAACAGGTCCAGCACCGGAAATTTCCAAGTATGTGAACAGAGCTTTGCAAGAGAAGAAACTGCTGTACTTTGGGATGGCAAACCTGGACTTTAAATTCAGTGACCCAGATCTGTGGACACCTGAGGATGTTGTGCCTGAATCTCTGAGAGAAACCTGGAGAGCAGAGAAAGAGCAGCTTCATGAGAAACTGAAGCAGGGCGACAAAATGGACGAAGTTGATGACAGTGGATTTTATGCAGGTGGTCCCATTCCTGTAGCTGGCGTAAGCATCACTCTGGATGATCAGGGCCTGAACGGGACCAATCGGGTGGTGCTGGATGGAGTTTTATCCCAATCTGAATGTGATCGCGTGATGCAGCTGGCAACAGTTGCAGCATCAGCGGGTGACGGGTACAGGGGGCGACGCTCTCCCCACACCCCACATGAGAAGTTTGAGGGTTTGACTGTCCTCAGAGCACTCAAGTTGGCTCAGGGCGGGCTGGTTAACCAATCAGATGCCAGGCTGCTGCATGGGATTGGGGAGACTGTAAAAGAGCTGATGGACTCCTACTTCAGAACTCCCTCTCTTCTTTATTTTGCTTACACACACTTGGTTTGCCGCTCCGCCATCACAGGACACCAGGAGGGCCGGTCGGATCTCTCTCACCCAGTGCATGTGGATAACTGCATCCTGGAGCCAGAAAGCAGACAGTGCTGGAGAGAAGCTCCGGCCTTCACTCATCGAGATCTCAGTGCAGTTCTGTACCTGAATGATGATTTTGAAGGAGGCGATTTCTTTTTTACCGATCGAGATGCCAAAACAGTAACTGCAACTGTTAAGCCAAAATGTGGGCGACTTGTTGGATTTACATCAGGCCCTGTGAATCCCCATGGTGTTACTGCAGTCACGAAAGGTCGTCGATGTGCATTAGCACTCTGGTTCACCACTGAAAAACACCACAAGGATATGGAACGTGAGGAAGCTGAAGACTTATGGGCCGCAGATGGACAGAGTGTAGTAAAAGACGAGAAGGCCGATGGCGAAAATGTCGTAAAATCTGCCCGCAGCGGGAGAAGCCAAGGCAAAGAGAAGAGCAAAGATAGAGAACGAGTGACAGGCAGACGGGATGAGCTGTAAGAATGACAGACGATTAAAGACAATCAGAAAAGAGACTTTGGTAGACACTGAATGCCACACTGCTTTTTCACCTAGTCTCTTAgtgaattataatttatatttatgccAGACTCTTCCCACCTGgttttgtgtttatatgtgtgagtgtgtgtggttatgtgtgtgcatttgtttcaGTATgtctgatgtttttgttttttagtcaaATAATAAAGAAAAGGTGAATTATGA

Function

symbol description
p3h3 Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in axial mesoderm and axis. Orthologous to human P3H3 (prolyl 3-hydroxylase 3).

GO:

id name namespace
GO:0032963 collagen metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0019797 procollagen-proline 3-dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-060503-231 Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in axial mesoderm and axis. Orthologous to human P3H3 (prolyl 3-hydroxylase 3).

Ensembl:

ensembl_id ENSDARG00000057879

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019507 True 2536 mRNA 0.48 16 11992498 12006828

Neighbor

gene id symbol gene type direction distance location
XLOC_009748 cxcr3.3 coding upstream 152364 11834516 ~ 11840134 (+)
XLOC_009747 cxcr3.2 coding upstream 167195 11818126 ~ 11825303 (+)
XLOC_009746 si:dkey-250k15.4 coding upstream 207212 11779534 ~ 11785286 (+)
XLOC_009745 ceacam1 coding upstream 231902 11724230 ~ 11760596 (+)
XLOC_009744 si:dkey-250k15.7 coding upstream 282739 11683548 ~ 11709759 (+)
XLOC_009750 gnb3a coding downstream 15715 12022543 ~ 12049762 (+)
XLOC_009751 NA coding downstream 110803 12117631 ~ 12139336 (+)
XLOC_009752 tpi1b coding downstream 229511 12236339 ~ 12254994 (+)
XLOC_009753 zgc:92606 coding downstream 258330 12265158 ~ 12276225 (+)
XLOC_009754 si:dkey-26c10.5 coding downstream 274204 12281032 ~ 12294468 (+)
XLOC_009737 NA non-coding upstream 408620 11580652 ~ 11583878 (+)
XLOC_009736 NA non-coding upstream 414091 11573189 ~ 11578407 (+)
XLOC_009733 NA non-coding upstream 615653 11361760 ~ 11376845 (+)
XLOC_009724 NA non-coding upstream 1374812 10617354 ~ 10617686 (+)
XLOC_009719 CU929328.1 non-coding upstream 1602711 10387719 ~ 10389787 (+)
XLOC_009755 CR388102.1 non-coding downstream 293341 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 non-coding downstream 373902 12380730 ~ 12380846 (+)
XLOC_009764 NA non-coding downstream 956132 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 1105436 13112264 ~ 13115609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05100744_05111181 P3H3 coding CI01000016 null 5100744 ~ 5111389 (+)