XLOC_000975


Basic Information

Item Value
gene id XLOC_000975
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7545049 ~ 7554339 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003324
CCCACTGTGGACAGACGCCACCGGTCGGAACAAGAAGGCGAGACGGATGACTTCTTACACGGACATGATGTTCTTGACGAAAGCTGTAAGAGGAGGAGCAGAAGTGCATAAGGAAATATCATCCCTACTGGCTCGCCATACAAGGCCAGAGGTGGCCTCTAAAAATAGCCATCGTAACGAGTCTGTGACAGATGAACATGAAAAAGGTACGAAAGGATAGCAAAAGCGTAATCCAAGTACACACCATGATGTAGTTTTGGGGCGCAGGAGCGGAGGGGCAGAAGTCAAGAAGCCGGAGTCCCAGGAGAGTGGTCCTGAAACATGGAGCAGCCCCTTCTTATTTATGCTATGCTAATGATGTCACGGGGGCGGAGCCTGTGATGCGCAAAGCTTCTTTAACTTTCTTAGGTCAAGCTGGAAGGAAGGCTGCCGCTTTCTCCAGTGTACGTGGTATTTTTAGATTTTGTGCTCCAGGGCTGCTTTTAAGACTTCTTGGCTGCGGTCAGCATTTTAGTTTTTTGCGTTGTCTTTGTTTTCAGGGTTTCTGTGTATTTATTTCATCCTTAGCCATGATTGTATGTAAATTATGAAGTCACCTGTTATGGGCTCTGTGTGTGTATTGAAGGAAGCAGCGGCTCAAGGAAGGCTTTTGATTACAGTGTTGATATTTTTAACTTGCATATGGTGGTCTCCGCCACTTATGGTTATACGGGAAGACTGAGGAAAAACAGTCCTCAGGACATGTTTGCACAGCAATAAATCAATTTGCATTTTAGACACTTTGGAAgatttttattgattaaaaaaataggtgtaaaacacaatttttactCAGAAATTGcaattatattttacaaataattgcGCTGAAAGGAATGCATCGAATTTGTAAACTAAAATGTACTACAAAGATCtgtataattaaacatttttcctCTATAACAAAAAAATGATCATAATGTAAGCAGATACTTTGTTATGTAATAATGAGAGTGgcaatttaacacatttaaaaggTAAACTATGTTCAGAATGGTACTTCTGAATCACAcacactgaaaataatcacaaataaaaGTAAGATTGCAGTAATTTCACCTTTAACTCAAAATTACGTATCGTTTTTTTTATAAGCTGTCAAATCAATAAAGTGGAGATATAACCTGAACACTACATAAATGTCAAAGATTAGTGGCTCATGTTCATATttctactattattttattattatttgtattcatATTGTTCGATGCTGTGCAGACAGGACGGTAGAGATATGACAAGAAAGCTGGGGTAGAAGGAGAGAGGACCACGAGGCGGGAATCGAACCCAGGTAGTCATGAATGCGGTTGCGCAATGTGTTTAGACACGAGACTAACTGACAAGCTCATGTTCATAGTTAATGTAATGTGATGATGTTACCTCTGCTACTCGTTTAGGATGCCTGTCCTGTAGCACAGATTCACTAAACTGTATTGACACCAGCTGATTAACTATGCTAACCCTTGTTTATTGGTTGTCTTGATCTGGATCAAAAAAGACCAAATCTAaatatgtacagctgaagtcagaattatcagtcctcctgaattattagcccgttgtatattttcc
>TCONS_00002906
ATTGTGAAATGACTGTGTGAAAATTGGGATGGGGGAATATTGGCAGCCTGGCCACAGTAACGTCATGTGCCTTTAACACACAGCTAAGAGGTGCTGTCGAAACCCTGGACGGGCGGAGAAAAAGGAAAGCAACCCTCACTTCATGAGTGGCCTTTTCCTTCTTCCCCGGTCTCCATCCCACTGTGGACAGACGCCACCGGTCGGAACAAGAAGGCGAGGTGGGTTGACTGCATGAGGACGATGTGACTTCCAAAACGATGGACGGATGACTTCTTACACGGACATGATGTTCTTGACGAAAGCTGTAAGAGGAGGAGCAGAAGTGCATAAGGAAATATCATCCCTACTGGCTCGCCATACAAGGCCAGAGGTGGCCTCTAAAAATAGCCATCGTAACGAGTCTGTGACAGATGAACATGAAAAAGGTACGAAAGGATAGCAAAAGCGTAATCCAAGTACACACCATGATGTAGTTTTGGGGCGCAGGAGCGGAGGGGCAGAAGTCAAGAAGCCGGAGTCCCAGGAGAGTGGTCCTGAAACATGGAGCAGCCCCTTCTTATTTATGCTATGCTAATGATGTCACGGGGGCGGAGCCTGTGATGCGCAAAGCTTCTTTAACTTTCTTAGGTCAAGCTGGAAGGAAGGCTGCCGCTTTCTCCAGTGTACGTGGTATTTTTAGATTTTGTGCTCCAGGGCTGCTTTTAAGACTTCTTGGCTGCGGTCAGCATTTTAGTTTTTTGCGTTGTCTTTGTTTTCAGGGTTTCTGTGTATTTATTTCATCCTTAGCCATGATTGTATGTAAATTATGAAGTCACCTGTTATGGGCTCTGTGTGTGTATTGAAGGAAGCAGCGGCTCAAGGAAGGCTTTTGATTACAGTGTTGATATTTTTAACTTGCATATGGTGGTCTCCGCCACTTATGGTTATACGGGAAGACTGAGGAAAAACAGTCCTCAGGACATGTTTGCACAGCAATAAATCAATTTGCATTTTAGACACTTTGGAAgatttttattgattaaaaaaataggtgtaaaacacaatttttactCAGAAATTGcaattatattttacaaataattgcGCTGAAAGGAATGCATCGAATTTGTAAACTAAAATGTACTACAAAGATCtgtataattaaacatttttcctCTATAACAAAAAAATGATCATAATGTAAGCAGATACTTTGTTATGTAATAATGAGAGTGgcaatttaacacatttaaaaggTAAACTATGTTCAGAATGGTACTTCTGAATCACAcacactgaaaataatcacaaataaaaGTAAGATTGCAGTAATTTCACCTTTAACTCAAAATTACGTATCGTTTTTTTTATAAGCTGTCAAATCAATAAAGTGGAGATATAACCTGAACACTACATAAATGTCAAAGATTAGTGGCTCATGTTCATATttctactattattttattattatttgtattcatATTGTTCGATGCTGTGCAGACAGGACGGTAGAGATATGACAAGAAAGCTGGGGTAGAAGGAGAGAGGACCACGAGGCGGGAATCGAACCCAGGTAGTCATGAATGCGGTTGCGCAATGTGTTTAGACACGAGACTAACTGACAAGCTCATGTTCATAGTTAATGTAATGTGATGATGTTACCTCTGCTACTCGTTTAGGATGCCTGTCCTGTAGCACAGATTCACTAAACTGTATTGACACCAGCTGATTAACTATGCTAACCCTTGTTTATTGGTTGTCTTGATCTGGATCAAAAAAGACCAAATCTAaatatgtacagctgaagtcagaattatcagtcctcctgaattattagcccgttgtatattttcc

Function

GO:

id name namespace
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003324 False 1614 lncRNA 0.39 3 7545049 7554163
TCONS_00002906 True 1833 lncRNA 0.41 3 7545049 7554339

Neighbor

gene id symbol gene type direction distance location
XLOC_000974 CABZ01075316.1 coding downstream 402906 7142039 ~ 7142143 (-)
XLOC_000972 klf7a coding downstream 1050665 6403551 ~ 6494384 (-)
XLOC_000973 CU571320.1 coding downstream 1091530 6453404 ~ 6453519 (-)
XLOC_000971 NA coding downstream 1144723 6398199 ~ 6400326 (-)
XLOC_000970 mdh1b coding downstream 1319764 6218632 ~ 6225285 (-)
XLOC_000976 mxa coding upstream 7977 7562316 ~ 7570181 (-)
XLOC_000977 mxb coding upstream 20012 7574351 ~ 7603734 (-)
XLOC_000978 efnb2b coding upstream 77780 7632119 ~ 7659870 (-)
XLOC_000979 arglu1b coding upstream 107752 7662091 ~ 7673376 (-)
XLOC_000980 NA coding upstream 145684 7700023 ~ 7701856 (-)
XLOC_000969 NA non-coding downstream 1371348 6159631 ~ 6173701 (-)
XLOC_000968 NA non-coding downstream 1459297 6060026 ~ 6085752 (-)
XLOC_000981 BX908756.3 non-coding upstream 217218 7771557 ~ 7844362 (-)
XLOC_000982 BX908756.2 non-coding upstream 247192 7801531 ~ 7801646 (-)
XLOC_000985 CR855320.6 non-coding upstream 365780 7920119 ~ 7920206 (-)
XLOC_000996 NA non-coding upstream 648051 8202390 ~ 8205228 (-)

Expression


Co-expression Network