XLOC_009753 (zgc:92606)


Basic Information

Item Value
gene id XLOC_009753
gene name zgc:92606
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12265158 ~ 12276225 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019513
TTTTACTGATGGATGCTAGAGCCTGTCGGGCCTTTTCCCATTCTGGGTTCTCGTGGACTGGGCCTTCACCACTTGAATTATTACCATACGGCCTGCAGATGAAAACATGATGTCTAGCCAGTATCAGCGAAGTGTTCCTTTGGAGGTCAGGAGAGCGGAGGGGGAACGAGTTCGTGCCAAACATCCGGATAAAATTCCGATAATTGTGGAGAGAGCTGCAAGATCAAGAGCTCCAGAACTTGACAAAAAGAAATACCTTGTTCCTTCAGACCTCACAGtcgGTCAGCTCTGTTTCCTAATCAGACAGCGAGTGTCTATGAGGCCAGAAGAAGCGCTCTTCTTTTTCGTCAAAAATTCCCTCCCTCCATCCAGTTCCCCCCTGTCTGCGGTGTATGAGgAACACCATGAGGAAGACCTGTTCCTGTATATGACGTACAGTAATGAGAGCGTTTATGGAGCCTGAGAGTGAGGACAGACGTACAGTGGAAACAGAGAACGAGAGAGAAAGATGATGCATTATTTTACAACTATTTATCCCATGTTTAAAACATTGTACCTAAAGGAAGCATTGTTGATAACGGGGTCTAATGGgtgctgtttttatttatcaGTATTTGGAGGAAACTCGAATGTGTTACACTGAACAGATTCTTGTCAGTAAAGTATTTGGACAGAGAGACGATAAAGAGagggaaaaaacaaaaataaattttggAGAAACAAAAAAGTTGTAGTAAGCAAGTATATATTACATCTTTCTCTCCCAGGAGCGCATCATTTGTATTTAATgcaaatagtgttttttttttttttgtaaagtattaTAAATAACTTTT
>TCONS_00019514
GAAAGAGGCGGTgcatcatttgttgttgtttagtcGGAGAAGTGGGCCAGTCGACATCTTCAACATAGAAGGCGacttataataaaaaagttattgaGTTTAAGTCATTACTTTAATTGCTTCGCTGATACGGGCATCTGATTTTCGTCCAAGAGGGGAAGACAGGCGTTAAATTTGGTTTTATCCTGAATTCACCAGTTTTCACCCAAGATGTCTAGCCAGTATCAGCGAAGTGTTCCTTTGGAGGTCAGGAGAGCGGAGGGGGAACGAGTTCGTGCCAAACATCCGGATAAAATTCCGATAATTGTGGAGAGAGCTGCAAGATCAAGAGCTCCAGAACTTGACAAAAAGAAATACCTTGTTCCTTCAGACCTCACAGtcgGTCAGCTCTGTTTCCTAATCAGACAGCGAGTGTCTATGAGGCCAGAAGAAGCGCTCTTCTTTTTCGTCAAAAATTCCCTCCCTCCATCCAGTTCCCCCCTGTCTGCGGTGTATGAGgAACACCATGAGGAAGACCTGTTCCTGTATATGACGTACAGTAATGAGAGCGTTTATGGAGCCTGAGAGTGAGGACAGACGTACAGTGGAAACAGAGAACGAGAGAGAAAGATGATGCATTATTTTACAACTATTTATCCCATGTTTAAAACATTGTACCTAAAGGAAGCATTGTTGATAACGGGGTCTAATGGgtgctgtttttatttatcaGTATTTGGAGGAAACTCGAATGTGTTACACTGAACAGATTCTTGTCAGTAAAGTATTTGGACAGAGAGACGATAAAGAGagggaaaaaacaaaaataaattttggAGAAACAAAAAAGTTGTAGTAAGCAAGTATATATTACATCTTTCTCTCCCAGGAGCGCATCATTTGTATTTAATgcaaatagtgttttttttttttttgtaaagtattaTAAATAACTTTTGTGCACATAATAAAAAATCTTTCAAATGT

Function

symbol description
zgc:92606 Predicted to enable GABA receptor binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagosome assembly; autophagy of mitochondrion; and cellular response to nitrogen starvation. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to several human genes including GABARAP (GABA type A receptor-associated protein).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0000045 autophagosome assembly biological_process
GO:0006995 cellular response to nitrogen starvation biological_process
GO:0000422 autophagy of mitochondrion biological_process
GO:0016236 macroautophagy biological_process
GO:0005776 autophagosome cellular_component
GO:0005829 cytosol cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0050811 GABA receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-462 Predicted to enable GABA receptor binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagosome assembly; autophagy of mitochondrion; and cellular response to nitrogen starvation. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to several human genes including GABARAP (GABA type A receptor-associated protein).

Ensembl:

ensembl_id ENSDARG00000040971

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019513 False 836 mRNA 0.41 5 12265158 12276196
TCONS_00019514 True 966 mRNA 0.40 5 12267672 12276225

Neighbor

gene id symbol gene type direction distance location
XLOC_009752 tpi1b coding upstream 10164 12236339 ~ 12254994 (+)
XLOC_009751 NA coding upstream 125822 12117631 ~ 12139336 (+)
XLOC_009750 gnb3a coding upstream 215396 12022543 ~ 12049762 (+)
XLOC_009749 p3h3 coding upstream 258330 11992498 ~ 12006828 (+)
XLOC_009748 cxcr3.3 coding upstream 425024 11834516 ~ 11840134 (+)
XLOC_009754 si:dkey-26c10.5 coding downstream 4807 12281032 ~ 12294468 (+)
XLOC_009755 CR388102.1 coding downstream 23944 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 coding downstream 104505 12380730 ~ 12380846 (+)
XLOC_009757 rasip1 coding downstream 241310 12517535 ~ 12560722 (+)
XLOC_009758 il11a coding downstream 335137 12611362 ~ 12617155 (+)
XLOC_009737 NA non-coding upstream 681280 11580652 ~ 11583878 (+)
XLOC_009736 NA non-coding upstream 686751 11573189 ~ 11578407 (+)
XLOC_009733 NA non-coding upstream 888313 11361760 ~ 11376845 (+)
XLOC_009724 NA non-coding upstream 1647472 10617354 ~ 10617686 (+)
XLOC_009764 NA non-coding downstream 686735 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 836039 13112264 ~ 13115609 (+)
XLOC_009766 NA non-coding downstream 892647 13168872 ~ 13172698 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G95792 NA unknown CI01000016 null 5219880 ~ 5225941 (+)
tiger barb (Puntius tetrazona) G73624 LOC103390470 non-coding NC_056708.1 CM032077.1 627778 ~ 635728 (-)