XLOC_009754 (si:dkey-26c10.5)


Basic Information

Item Value
gene id XLOC_009754
gene name si:dkey-26c10.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12281032 ~ 12294468 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019515
GAAAATCAGAACTGCTGTGATCTGAGAagcagcatcagctcaggatttCTTTGGGCGAAGCTGGAAATTAAACCAGTTTACTGACCAGGATCATACTGGGAACTCTGACTAATTAGTTAGGAAACGAAACTCAAGGGAATTAgcactcactcacaaacacacacacacacacaaaacaatggAGAGCCAACAAGTGGTAGAAGTGGAGTTGGAGGAGATTGCGCTGGTTGAAGAGCACAATGAGAGAGAAAACGAGGACGAGCAGGAGACCGAAGCTGATACTGAAAAGGAGACTGCAGACGAAGGCAATGTTTACTCCTCTCTTACTGACCCTTCTGAATATGTGTACGGTGTGCCTTCTTCAACTCGCTCGTATACAGTCAATAAAGATTCATCAGATATATACCGGAGAGTTCGTCTTTACCGCGTCGTTTCCCTGGTTCTTTTGGTCATCTGCGTCCTCTTGCTGATTGTGGTCCTTGTGCTGTTTATTAAGTTGACTGGGATGCACTCATGCCAGCTGACTGAGACGACTCTGGAACAGGAATGCAGTTTGAAGAAATGCCAAGAGGTTTACCAACAGCCATTTGAAAGAGCCTtgggtCTGTGCCGTGACTGTGGCAGCGGCTGGCTGAGATTCGAGAACACTTGTTACTTCCTGTCCGAGACGCGTCTCACCTGGCAGAAGAGCAGAGAGGAGTGCCGGAGGAAAGGAGGAGATCTTGCTGTCATCACTAATGAACGTGTGCAGATGTTTCTGAGTAAGAGGGCAATTGTAAACTACTGGATCGGCCTGAGTCATGTGGGGACCAATCAATGGATGTGGATTAACAACACTGTATTGACAGTGAGATACTGGGGCGATTCTTCTTCCTCTGGAGAATGTGGCATCATGGTTGGAGAGAAATCGGCAGAGCGGAGCTGGCAGCCAGCGTCCTGCAGACTGAACTTACAGTACATCTGTCAGAAGATGTAGACCACACCAATCCACACCATCATTCAGCACATACTCAAGATTAAATCAGAaatgagacatttttttttaagtgtacataACTGGTGCAAAAAGCTTTTTAGATATTTATGTGCTTTATTTGCATTACTGTTGCACTCATTTCTAACCACACTCATCATTTACACAAAGCTTGTTATTTGCACTAAATGTGTCTAATGTTCACACTAATGAATTGCACGTACATTCTGTTtgatatgtttttgtttgtatttcttaattaaacttCCACCTTTAT
>TCONS_00019516
CGCGGCCGAGAACCCCTCAAGTGCATCCGCGCGCACTTAAAGAGCTGAGCTGCGGGCAAGTGAGCACTAGCATATTAAAGGTTGTGCAGATTGATTCATTTAGATTCTCTGGCCTTCGTCGAATTAAGACGCGTTAGCATGTACGTAAAACTGTGCAATTTCGGCAAGTCCACAGACGGCAAGCCTAAACCGAAACCACTGCCGCCAGATTCAGATTCATCAGATATATACCGGAGAGTTCGTCTTTACCGCGTCGTTTCCCTGGTTCTTTTGGTCATCTGCGTCCTCTTGCTGATTGTGGTCCTTGTGCTGTTTATTAAGTTGACTGGGATGCACTCATGCCAGCTGACTGAGACGACTCTGGAACAGGAATGCAGTTTGAAGAAATGCCAAGAGGTTTACCAACAGCCATTTGAAAGAGCCTtgggtCTGTGCCGTGACTGTGGCAGCGGCTGGCTGAGATTCGAGAACACTTGTTACTTCCTGTCCGAGACGCGTCTCACCTGGCAGAAGAGCAGAGAGGAGTGCCGGAGGAAAGGAGGAGATCTTGCTGTCATCACTAATGAACGTGTGCAGATGTTTCTGAGTAAGAGGGCAATTGTAAACTACTGGATCGGCCTGAGTCATGTGGGGACCAATCAATGGATGTGGATTAACAACACTGTATTGACAGTGAGATACTGGGGCGATTCTTCTTCCTCTGGAGAATGTGGCATCATGGTTGGAGAGAAATCGGCAGAGCGGAGCTGGCAGCCAGCGTCCTGCAGACTGAACTTACAGTACATCTGTCAGAAGATGTAGACCACACCAATCCACACCATCATTCAGCACATACTCAAGATTAAATCAGAaatgagacatttttttttaagtgtacataACTGGTGCAAAAAGCTTTTTAGATATTTATGTGCTTTATTTGCATTACTGTTGCACTCATTTCTAACCACACTCATCATTTACACAAAGCTTGTTATTTGCACTAAATGTGTCTAATGTTCACACTAATGAATTGCACGTACATTCTGTTtgatatgtttttgtttgtatttcttaattaaacttCCACCTTTATATTTA

Function

symbol description
si:dkey-26c10.5 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; liver; and neurons. Orthologous to human CLEC2A (C-type lectin domain family 2 member A); CLEC4G (C-type lectin domain family 4 member G); and CD69 (CD69 molecule).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060607-13 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; liver; and neurons. Orthologous to human CLEC2A (C-type lectin domain family 2 member A); CLEC4G (C-type lectin domain family 4 member G); and CD69 (CD69 molecule).

Ensembl:

ensembl_id ENSDARG00000088023

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019515 False 1250 mRNA 0.44 7 12281032 12294463
TCONS_00019516 True 1080 mRNA 0.45 6 12286148 12294468

Neighbor

gene id symbol gene type direction distance location
XLOC_009753 zgc:92606 coding upstream 4807 12265158 ~ 12276225 (+)
XLOC_009752 tpi1b coding upstream 26038 12236339 ~ 12254994 (+)
XLOC_009751 NA coding upstream 141696 12117631 ~ 12139336 (+)
XLOC_009750 gnb3a coding upstream 231270 12022543 ~ 12049762 (+)
XLOC_009749 p3h3 coding upstream 274204 11992498 ~ 12006828 (+)
XLOC_009755 CR388102.1 coding downstream 5701 12300169 ~ 12300286 (+)
XLOC_009756 CR388102.6 coding downstream 86262 12380730 ~ 12380846 (+)
XLOC_009757 rasip1 coding downstream 223067 12517535 ~ 12560722 (+)
XLOC_009758 il11a coding downstream 316894 12611362 ~ 12617155 (+)
XLOC_009759 nat14 coding downstream 337960 12632428 ~ 12639753 (+)
XLOC_009737 NA non-coding upstream 697154 11580652 ~ 11583878 (+)
XLOC_009736 NA non-coding upstream 702625 11573189 ~ 11578407 (+)
XLOC_009733 NA non-coding upstream 904187 11361760 ~ 11376845 (+)
XLOC_009724 NA non-coding upstream 1663346 10617354 ~ 10617686 (+)
XLOC_009764 NA non-coding downstream 668492 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 817796 13112264 ~ 13115609 (+)
XLOC_009766 NA non-coding downstream 874404 13168872 ~ 13172698 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05229439_05231984 NA coding CI01000016 null 5229339 ~ 5233159 (+)