XLOC_009757 (rasip1)


Basic Information

Item Value
gene id XLOC_009757
gene name rasip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12517535 ~ 12560722 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019519
TAGAAAGCAACCAAAAGAACTTTCTAGAACAACTTTACCTTCGAAAAtggaaaaaacaaactaaaaactgaGAGAACGAAAAGATACTAAAGAGTCAAAGCAAGGCCCGAGGCAGAAAATGGACTGTTTAAGCCTAATACTTCTGGAGTAAGACGACACAAATCTGACCTCCATTGATATTTTATCATCCTGAAACTTTCCGTAAACAACAACAGCTATTTTGAAGATTTATCCTGAAATAAAGAGGACGTCCATCACAGTGGATGGAGGAGTCTGGCAGTCCCCGATTTAGGAAGCTCCATTTCCCAGTGGGCTTGTGGATTAATTCCCCACGGAAACACTTTGCCAAGCTGGGAGCTCGATGGCCCAGTGCTGCCTCAGTCAAATCCACCACGAGCTCAGATGCCGCTTCAGTGCACGAGGCCCCATCATCAGTCCCCTCCTCCCTCTCTCACTCCACCCCTTCTCTAGCCCCACCCTCTCCATCCCCTTCCCCCGCCTTCCTCCGCCCTCGCCCGGCCAATCAGCAATCCCGGGCCAAGCGTCTGTCCCACCTCTTTCTGAGGGGCCGGTCCAATAGCGACAGGGACCGGGCCATTGGAGAACGAGAAAGGGAGATATGGGCGCATTCAGCCACCCCTTCATCCCATCACTACCTGCCACCAGCCTCCTCTAATGCTCCCGGGCTGGTCAAGATCTATGGAGATGCCCTGTCCAGTGGAGCCAACTACAGGAGCCTGCTGGCGAATATGCACTCCACTGCCCGCCAGCTCATTCAGCAGGTCATCACCCGCtacacggagagagagagagagaatgagagtgaAGACACAGCTCTCCAGAAATATTTCCCCGAGGACTTCCTGTTGTGTGATGTCATTGGAAAGCCCATTCACCAGGCAGATGGAGCTGTTAAATGGCAAACGGAGTGCCGGAGGGGTGTAGCGTCCTGGGAATGTCCCTTACAGCTGGTGGATATGTGGAGGCCCAAAGACGGTTTCGAGCGACGCTTCGAGATCCAGCGCCTGGATGAGTATGAGAGGGAGGAGAAAGAGAAGGAGAAGGAAAGAGAGAGGGATGGAGAAAGCTATCAAGGTGTGCGCTGGAGGCGGAGCCGCATGTCTTCTGGGGGCGGAGCTGAGGAAGAGCGAGGTCATCGAGGGCGGAACTCAGAGCTCAGGAGGAGCATCAGTGACATGAACCTTAGTCTGAGGCGCCGACAGGGAAACACTGGCAATGACCCTCGCCGCTCTGGCTGTGCCCAAAACAATGGACAGGACAGGAAGAACATAGTGAGCATGATCGCAACTGAAGGAGGAGAGGTCAGCGGGTCAAGAGGAGGCGTCAGCGAGTCAGACAGACGCACCCGCGTGGCAGAGGAAGACAAAGACACCTGCGACCTGGAAGTGATGTCGCAAAGCCTGATCCTTCCACCGACAGACCGGCCTTACTTCCTGTTACTGCAGGGCTACGACCAGAGCAAGGACTTTGTGCTGTACATCATGGCGGGTCACACTCATGTTTTTGGCCGGAAGCCGACGTTTCGTGAGCGCGAGATGGACAGGGAGAGGGAGAAGAAGGGGAAGAGGCCTCTAAAAGTGGACACGTACCTCTCAGCTCCTGACCTGCTCGCCCGACACCTTCTGATCAGAAGAGACACAGCCGTCCCAGAGCAACCACATGGTCAAGCCCTGGCACGTCCATTCAGAGGAGGACAAGCTACTCTTAATGGAGCTCCACTCTACAGAGAAGCAGTCTTAAAGCCAGGAGACCTTCTTGGTCTTGGCAGCCACTTTCTTTTCCTGTACCGTGACCCGCGTGTGACTCCCGTCCCGCCACTGGCACTACCGCCACCATGGCAAGGTGACATGCCGACTTCCTTCGGGCCCGGCgggatgacagacagacaggaaaTGCTTCGGCTGTATCTTGGGTCCACAGAGTCCCTGCTGAGATACCAGGCCAAACATGCTGATGCCCTGCTGCAGgaaattattttaaagaacacGAGCCCAGATTCAGGGGGCGGAGCTTTGGCACCTGCATATCTTCTGTCACTCATGATTGACTACGCCTCTAAACATCTGGATCCCGAATTAACACCACAGCTGCTTTTAAAGGCAGCCAATCAGATCAAAGGGATTGTTTGGGACAAAATTAAAGAGTTCGGTGACAAACATCCAACACAAAACTCGGCAGATGCTGAGGTTGATCTTCCTCCACCGAGCGCTCAGAAACTGTCCTCTGACCTCCGGCCTCTCATGTTCTGGATGTCCAACGCCACAGAGCTCCTCAACTTCTTCCAGGTCAAAGTTGAAGCCCTGGAGAAAGAGTGGGAATTTGAAGCTCCTGGTGACCCTGTTCTCTCGGCTGACATGGACACCTGCTCTGAGGCTCTGGCTCAGCTCGATGACGTCATAATGCACACCTTTCAGCAGTGCGTTTACCATCTGACCAAGACTTTGTACTCCTTGCTCCCTGCACTGTTGGACACAAACCCATTCTCCAGCGAGGAAAGGAAGAAAGCAAAAGCAGGAGTGAAGGACAAGACAGGTAGCGGAGGGGAAGGAGACGAGGAAGAGGATGGGTCAGCTTTGCCACCCACTGTAGCAGGATTGGTCGAGGTGTATCGCTGCTCTCTTCAGCTCTCCAGAGAAGCTTGTCTCTCTCCGCCGCTGACCTCCCAAACATTTGGCTACCTCTTCTTCTTCACAAACACCTCTCTTCTCAACACTCTCCTAGAGAGAGATAATCTTTTCTCTTGGTCACGCGCGGTTCAGATTCGAACAAATCTGGACTTGGTCTTAGACTGGCTGCAAGGAGCTGGTCTTGGAGATATTGCGTCAGAGTTTCTGAAGAAGCTTTCAGTTACTGTCAACTTCCTGTGCATTCCGAAAACCCGCCTTATTcagTCATCCTGGTCAAGTTTACAGGAAGAGCACCCCCTGCTAAGTCCATCCCAGCTTCACCATCTTCTCACTCATTATAAGCTCGGGCCAACGAGAGCCCCGCCTTCTTCATGGGCTCCGCCTCTCGGAACCGAACTTGGAGGGGATATTTTTGAGAGTTTCCTGGACCATCCTCCTCTTATCCTGCCTAATGAGACGCCTCGCCTGGACCTGACTCAGCCAATCCCCAGCCCTGAGCTTCAGAAGGAAGTGACACGCCTGCGAACGTTCCTGTGGGGGCTCGACCAGGATGAACTTCCTGCTAATCAGCGGACGAGACTGTAAAAATGTCTTCACCCCATTTGTAAAATTATGACCATTATCTACTTTATCTACAAACTATCAGCTTCACGTAGAATACATTTCATCTGACATTCCTTCTTTCCTTGCCTATCAAGCACACGTTTGACTTTAATAGACATAAACTGGATCACTTATGATTATGTATAATTCAATGCATTAGTTAACTTAAAGGTAACTAATATGAGATTCATTGCCTGGTTGCAATGATAAATGAAATTTCCTCTTTTGTAttcttttaaattagtttttttttttttttttaacacatccaaATATTCTACTACCATAAACCAATTTAAATGTTATGATCAGGCTAATTGATTATATATTTTCccatttctttaataaataaaataacatac
>TCONS_00019520
ATGGAGGAGTCTGGCAGTCCCCGATTTAGGAAGCTCCATTTCCCAGTGGGCTTGTGGATTAATTCCCCACGGAAACACTTTGCCAAGCTGGGAGCTCGATGGCCCAGTGCTGCCTCAGTCAAATCCACCACGAGCTCAGATGCCGCTTCAGTGCACGAGGCCCCATCATCAGTCCCCTCCTCCCTCTCTCACTCCACCCCTTCTCTAGCCCCACCCTCTCCATCCCCTTCCCCCGCCTTCCTCCGCCCTCGCCCGGCCAATCAGCAATCCCGGGCCAAGCGTCTGTCCCACCTCTTTCTGAGGGGCCGGTCCAATAGCGACAGGGACCGGGCCATTGGAGAACGAGAAAGGGAGATATGGGCGCATTCAGCCACCCCTTCATCCCATCACTACCTGCCACCAGCCTCCTCTAATGCTCCCGGGCTGGTCAAGATCTATGGAGATGCCCTGTCCAGTGGAGCCAACTACAGGAGCCTGCTGGCGAATATGCACTCCACTGCCCGCCAGCTCATTCAGCAGGTCATCACCCGCtacacggagagagagagagagaatgagagtgaAGACACAGCTCTCCAGAAATATTTCCCCGAGGACTTCCTGTTGTGTGATGTCATTGGAAAGCCCATTCACCAGGCAGATGGAGCTGTTAAATGGCAAACGGAGTGCCGGAGGGGTGTAGCGTCCTGGGAATGTCCCTTACAGCTGGTGGATATGTGGAGGCCCAAAGACGGTTTCGAGCGACGCTTCGAGATCCAGCGCCTGGATGAGTATGAGAGGGAGGAGAAAGAGAAGGAGAAGGAAAGAGAGAGGGATGGAGAAAGCTATCAAGGTGTGCGCTGGAGGCGGAGCCGCATGTCTTCTGGGGGCGGAGCTGAGGAAGAGCGAGGTCATCGAGGGCGGAACTCAGAGCTCAGGAGGAGCATCAGTGACATGAACCTTAGTCTGAGGCGCCGACAGGGAAACACTGGCAATGACCCTCGCCGCTCTGGCTGTGCCCAAAACAATGGACAGGACAGGAAGAACATAGTGAGCATGATCGCAACTGAAGGAGGAGAGGTCAGCGGGTCAAGAGGAGGCGTCAGCGAGTCAGACAGACGCACCCGCGTGGCAGAGGAAGACAAAGACACCTGCGACCTGGAAGTGATGTCGCAAAGCCTGATCCTTCCACCGACAGACCGGCCTTACTTCCTGTTACTGCAGGGCTACGACCAGAGCAAGGACTTTGTGCTGTACATCATGGCGGGTCACACTCATGTTTTTGGCCGGAAGCCGACGTTTCGTGAGCGCGAGATGGACAGGGAGAGGGAGAAGAAGGGGAAGAGGCCTCTAAAAGTGGACACGTACCTCTCAGCTCCTGACCTGCTCGCCCGACACCTTCTGATCAGAAGAGACACAGCCGTCCCAGAGCAACCACATGGTCAAGCCCTGGCACGTCCATTCAGAGGAGGACAAGCTACTCTTAATGGAGCTCCACTCTACAGAGAAGCAGTCTTAAAGCCAGGAGACCTTCTTGGTCTTGGCAGCCACTTTCTTTTCCTGTACCGTGACCCGCGTGTGACTCCCGTCCCGCCACTGGCACTACCGCCACCATGGCAAGGTGACATGCCGACTTCCTTCGGGCCCGGCgggatgacagacagacaggaaaTGCTTCGGCTGTATCTTGGGTCCACAGAGTCCCTGCTGAGATACCAGGCCAAACATGCTGATGCCCTGCTGCAGgaaattattttaaagaacacGAGCCCAGATTCAGGGGGCGGAGCTTTGGCACCTGCATATCTTCTGTCACTCATGATTGACTACGCCTCTAAACATCTGGATCCCGAATTAACACCACAGCTGCTTTTAAAGGCAGCCAATCAGATCAAAGGGATTGTTTGGGACAAAATTAAAGAGTTCGGTGACAAACATCCAACACAAAACTCGGCAGATGCTGAGGTTGATCTTCCTCCACCGAGCGCTCAGAAACTGTCCTCTGACCTCCGGCCTCTCATGTTCTGGATGTCCAACGCCACAGAGCTCCTCAACTTCTTCCAGGTCAAAGTTGAAGCCCTGGAGAAAGAGTGGGAATTTGAAGCTCCTGGTGACCCTGTTCTCTCGGCTGACATGGACACCTGCTCTGAGGCTCTGGCTCAGCTCGATGACGTCATAATGCACACCTTTCAGCAGTGCGTTTACCATCTGACCAAGACTTTGTACTCCTTGCTCCCTGCACTGTTGGACACAAACCCATTCTCCAGCGAGGAAAGGAAGAAAGCAAAAGCAGGAGTGAAGGACAAGACAGGTAGCGGAGGGGAAGGAGACGAGGAAGAGGATGGGTCAGCTTTGCCACCCACTGTAGCAGGATTGGTCGAGGTGTATCGCTGCTCTCTTCAGCTCTCCAGAGAAGCTTGTCTCTCTCCGCCGCTGACCTCCCAAACATTTGGCTACCTCTTCTTCTTCACAAACACCTCTCTTCTCAACACTCTCCTAGAGAGAGATAATCTTTTCTCTTGGTCACGCGCGGTTCAGATTCGAACAAATCTGGACTTGGTCTTAGACTGGCTGCAAGGAGCTGGTCTTGGAGATATTGCGTCAGAGTTTCTGAAGAAGCTTTCAGTTACTGTCAACTTCCTGTGCATTCCGAAAACCCGCCTTATTcagTCATCCTGGTCAAGTTTACAGGAAGAGCACCCCCTGCTAAGTCCATCCCAGCTTCACCATCTTCTCACTCATTATAAGCTCGGGCCAACGAGAGCCCCGCCTTCTTCATGGGCTCCGCCTCTCGGAACCGAACTTGGAGGGGATATTTTTGAGAGTTTCCTGGACCATCCTCCTCTTATCCTGCCTAATGAGACGCCTCGCCTGGACCTGACTCAGCCAATCCCCAGCCCTGAGCTTCAGAAGGAAGTGACACGCCTGCGAACGTTCCTGTGGGGGCTCGACCAGGATGAACTTCCTGCTAATCAGCGGACGAGACTGTAA

Function

symbol description
rasip1 Predicted to enable GTPase binding activity. Acts upstream of or within vasculature development. Predicted to be active in cell-cell junction. Is expressed in dorsal aorta; intersegmental vessel; and posterior cardinal vein. Orthologous to human RASIP1 (Ras interacting protein 1).

GO:

id name namespace
GO:0001944 vasculature development biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-120403-3 Predicted to enable GTPase binding activity. Acts upstream of or within vasculature development. Predicted to be active in cell-cell junction. Is expressed in dorsal aorta; intersegmental vessel; and posterior cardinal vein. Orthologous to human RASIP1 (Ras interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000074829

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019519 False 3613 mRNA 0.50 16 12517535 12560722
TCONS_00019520 True 2970 mRNA 0.55 15 12521872 12560342

Neighbor

gene id symbol gene type direction distance location
XLOC_009756 CR388102.6 coding upstream 136689 12380730 ~ 12380846 (+)
XLOC_009755 CR388102.1 coding upstream 217249 12300169 ~ 12300286 (+)
XLOC_009754 si:dkey-26c10.5 coding upstream 223067 12281032 ~ 12294468 (+)
XLOC_009753 zgc:92606 coding upstream 241310 12265158 ~ 12276225 (+)
XLOC_009752 tpi1b coding upstream 262541 12236339 ~ 12254994 (+)
XLOC_009758 il11a coding downstream 50640 12611362 ~ 12617155 (+)
XLOC_009759 nat14 coding downstream 71706 12632428 ~ 12639753 (+)
XLOC_009760 aicda coding downstream 99755 12660477 ~ 12665652 (+)
XLOC_009761 epn1 coding downstream 169589 12730311 ~ 12756528 (+)
XLOC_009762 u2af2a coding downstream 251492 12812214 ~ 12821768 (+)
XLOC_009751 NA non-coding upstream 378199 12117631 ~ 12139336 (+)
XLOC_009737 NA non-coding upstream 933657 11580652 ~ 11583878 (+)
XLOC_009736 NA non-coding upstream 939128 11573189 ~ 11578407 (+)
XLOC_009764 NA non-coding downstream 402238 12962960 ~ 12963877 (+)
XLOC_009765 NA non-coding downstream 551542 13112264 ~ 13115609 (+)
XLOC_009766 NA non-coding downstream 608150 13168872 ~ 13172698 (+)
XLOC_009768 NA non-coding downstream 938639 13499361 ~ 13501965 (+)
XLOC_009769 NA non-coding downstream 1051932 13612654 ~ 13614188 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05335334_05352325 RASIP1 coding CI01000016 null 5335334 ~ 5352667 (+)