CI01000052_03490583_03492859


Basic Information

Item Value
gene id CI01000052_03490583_03492859
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 3490147 ~ 3492859 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000052_03490583_03492859.mRNA
GTATATAATGCTACGGAGAGTCAATTTTTATTTCCCCCAAAAAAAGGGTGTAAAGTGTTTGGGCTAGAACACAAACATTTCACATTTTAGACACATTTCTCAAACTTATTTGGGTGAGAGGGTGACCTAAATTCTCCTGTGAGTCTTCAGATGGAAAACCCCAAATAACAAAAACTATTACAGTCAAATGAATGAACAATTAGTTGTCAGCAAGTATACAAAACTTTCACTTCAGTTTTTTGTAGCTCAGCTCTTGTGAAAAATGTCCCAGTGTAAGTTACTTGATCACATGTTGTTTTGTGGGCCAGTCATAAGCTTGATTTTCCAGTTTGATGAGTTGCGATGCCAAACTGGGCTGGCATCATTTAAGACATTTACTGTAACCGCTTTAGGGCTCATTCCATCTCCATGCCAGTGAAACAACACTGAATGCAAAATGCAATATGATCTTGTGATACACCTGGCCTTGTTGTTGCATATTTTGTTTGAAACAGCTCATGGACATTATGGCTTCATCCTAATTCTCTGTCGAGTACTTGGTTCTCTACAAAATGTTGAGTTCATTTACTCAATATATTATGACAAAACTGAATTGCTGAGATTTAACAGTACTGAAAATAAAGTTGTTGCTTACACTGAATATGCGATGAAATGGGCAGATGATTTTAATAAAAACCCTGAGTGGCTACATAAGGAGGCAGAGAAACACATTGCCGAATGCAAGTACTTTGGGCAATTCCTCCATATGGAAGAAAAAACAGTAAAACCAGAAGTCATTGTCCGGTCAGTAAGGCAGGCAAGTGGTAAAAGTCCAGCCATGTTGATCTGCAGTGCCTATGACTTCTACCCCAAACCCATCAAACTGACGTGGATGAGAGATGATAAAGAAATGACAACTGATGTGACCTCCACTGAGGAGCTGGCTGATGGAGACTGGTACTACCAGATTCACTCCTACCTAGAATACTTTCCCAAACCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCTTTCATGGACCCATGATCTATCACTGGGATTCATCTCTGTCAGAGTCTGACAGAAATAAGATGATAATTGGTGCTGCAGGGGTGGTTTTGGGGGTGATTATGGCAGCAGGAGGACTGATCTACTACAAAAGAAAACACACAG

Function

NR:

description
MHC TLA beta-1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000052_03490583_03492859.mRNA True 1157 mRNA 0.41 4 3490147 3492859

Neighbor

gene id symbol gene type direction distance location
CI01000052_03484560_03485959 NA coding upstream 3894 3484560 ~ 3486253 (+)
CI01000052_03453140_03462799 NA coding upstream 27348 3452952 ~ 3462799 (+)
CI01000052_03401048_03405703 NA coding upstream 83835 3400270 ~ 3406312 (+)
CI01000052_02850485_02858740 NA coding upstream 631286 2850355 ~ 2858861 (+)
CI01000052_02845585_02849894 NA coding upstream 640169 2845550 ~ 2849978 (+)
G224949 NA non-coding upstream 62383 3426339 ~ 3427764 (+)
G224891 NA non-coding upstream 109983 3379067 ~ 3380164 (+)
G224898 NA non-coding upstream 143435 3345273 ~ 3346712 (+)
G224899 NA non-coding upstream 209882 3280024 ~ 3280265 (+)
G224863 NA non-coding upstream 241089 3248733 ~ 3249058 (+)
G224953 NA other upstream 30011 3431136 ~ 3460136 (+)
G223694 NA other upstream 1385848 2049326 ~ 2104299 (+)
G223545 NA other upstream 2219220 1270492 ~ 1270927 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013488 mhc2dbb coding NC_007129.7 CM002902.2 29922939 ~ 29925717 (-)