XLOC_009767 (pitpnc1b)


Basic Information

Item Value
gene id XLOC_009767
gene name pitpnc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13424534 ~ 13453818 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019533
AGACGCAGAAAGAGAGAAGTGGAGGGAGGCTCTTATCTCCGCACCGTCACATTAAAACCATAAATTAAAAACAGAGCGGAAGAGCCGCCCGCGTGCGTGCATGATTCAGAGAGCCAGGaaagaaacaataaaataaacacggCGGATACACATTGGCAGAGTTTACAGGAGCAGCTCTGACATCAGTCAAGTGAGAGGAGGAAGAGGGGTGCAACATTGCTTCACGGAAACCGCTTAACAGTTTCACTCGCTGACACAGTTAGAAAGTAGGAAACAGAGAAACGGAAACAAAAAGGATCCAACTAATTTCCTTTTAAAGCAAACTATGTTGGTCAAAGAGTACCGGATATGCATGCCGCTCACTGTGGATGAGGATCGGCCAGTTGTACATGATCAGCAAGCACAGCAATGAGCAGAGCGGAGGTGGTGAAGGGGTGGAGGTCGTCCGTAATGAACCCTGCACAGACCCCAAACATGGATCTGGTCAGATCACAGAGAAACGCATCTACCTCAAcagCAAACTGCCAACTTGGATGAGGAGGTTTGTTCCCATggttttttatttaacagaaactGCCTGGAACTTCTACCCATACACCATAACAGaGTATACGTGTTCTTTCCTACCGAGGTTCCATGTCAAGATTGAGACGCACTTTAAGAATGACAACGGCTGCAGCAAAAATGTGTTCGGCGATGACCCCACTCCAATGGACAACGTCTGCTTTTTGGATATTTTAAGTGACCCAATCCCTGAAAAAAATTACAAGAAGTCAGAGGATCTGAGCGACTGGGTGTCGGAGAAAACAGGCCGGGGACCCCTAGTGGATGGCTGGAGGAACGACACCAAACCCATCATGTGCTCCTACAAGAGAGTGACCTGCAGCTTTGAGGTTTACGGCTTCCAGGGAAGAACAGAAGACTTTGTTCACAGGAACATTCGTGACATTCTGTTGGTGGGACACAGACAGGCGGTGGCATGGATTGACGAGTGGCATGGAATGACTCTCGAGCAGGTGAGAGAGTTTGAGAGAAAACAACAGGAGGAGACCAACTGCAAACTCAAGAGTGACATTGCCAGCCCAGGCTCTGATCCTGCAATTCGACCCAGCTTCACTCGCTCCATCTCTGTTACGGATGAATCGTCACTGAAAAAGATGGGGGTTACGACTCTAGACATTCCAAGCTCTCAGTCCTCCCTCAAGGGTCCTGTGAGATTAAAATCAACCCCAGAATAACACCTGCAATGACCACTGCCAATACCACCTTGACATCTGCCAAATATCTCTCCACTTGGACTGTCTCTTCTAGCAAAAACTGGTTGAAATGAAaacacaatcgtcactttctGCTCACCATTCCCTGCATACCTGTGTTTAATGCAGAGGATGACATTAACAAAAGCACCTTACTAAAGAACGTTAGGTACTATGTCTAAACAGACTGGAGCGAAACCATTCAATTTTCTCCCAGACAAGACAGTCTCTACAAAATGCATTCAACCAATGGTCTATTCACCAGCCTATGAACATGAATGGATGCACATATTCATCCGAGCACAGAATGAAGATGAAGAGGCTCTATTGACATAATGAAACATCCAGCAGACAGTGTCGGTGAAACCCCCTCATATGGATCACGGCGAATGAAAGTGACTAGCCAAAATATCTAGTGGCTTACGGGATATTGAGACTAACCTTTGACCCTGTATCAATACATTGATGGAGCATAATTGATTGTTTAGTCGTGCAGCACATCGTGAGAACTTTATCAATAGTACTTTGGGAGATAAGACTAAAGACAACAGCAGACTGAGCATTATGCATTATTTGACATTGATATCACATCCATCATCTGTCACTTACATGCCACATTCTCTGTTAGTCtctgttttggtttggtttttaaGGATTAAAAGGGAATTTGGTATTTTCTGTCATTTGTTAAAGAAATAGTTAAACTGACCTTAACTTACATCTCTGGTTAAGCCAGTTTTGTTGATTAAGCTGTCCAAGCAAACAAAGTAATGTTGAAAGTGCCtcattgtatatttttataataaatttactAAGGAATGCATGAAATTATA
>TCONS_00019534
AGAAGTGGAGGGAGGCTCTTATCTCCGCACCGTCACATTAAAACCATAAATTAAAAACAGAGCGGAAGAGCCGCCCGCGTGCGTGCATGATTCAGAGAGCCAGGaaagaaacaataaaataaacacggCGGATACACATTGGCAGAGTTTACAGGAGCAGCTCTGACATCAGTCAAGTGAGAGGAGGAAGAGGGGTGCAACATTGCTTCACGGAAACCGCTTAACAGTTTCACTCGCTGACACAGTTAGAAAGTAGGAAACAGAGAAACGGAAACAAAAAGGATCCAACTAATTTCCTTTTAAAGCAAACTATGTTGGTCAAAGAGTACCGGATATGCATGCCGCTCACTGTGGATGAGTACAGGATCGGCCAGTTGTACATGATCAGCAAGCACAGCAATGAGCAGAGCGGAGGTGGTGAAGGGGTGGAGGTCGTCCGTAATGAACCCTGCACAGACCCCAAACATGGATCTGGTCAGATCACAGAGAAACGCATCTACCTCAAcagCAAACTGCCAACTTGGATGAGGAGGTTTGTTCCCATggttttttatttaacagaaactGCCTGGAACTTCTACCCATACACCATAACAGaGTATACGTGTTCTTTCCTACCGAGGTTCCATGTCAAGATTGAGACGCACTTTAAGAATGACAACGGCTGCAGCAAAAATGTGAGTGTTCGGCGATGACCCCACTCCAATGGACAACGTCTGCTTTTTGGATATTTTAAGTGACCCAATCCCTGAAAAAAATTACAAGAAGTCAG
>TCONS_00019535
AGTGGAGGGAGGCTCTTATCTCCGCACCGTCACATTAAAACCATAAATTAAAAACAGAGCGGAAGAGCCGCCCGCGTGCGTGCATGATTCAGAGAGCCAGGaaagaaacaataaaataaacacggCGGATACACATTGGCAGAGTTTACAGGAGCAGCTCTGACATCAGTCAAGTGAGAGGAGGAAGAGGGGTGCAACATTGCTTCACGGAAACCGCTTAACAGTTTCACTCGCTGACACAGTTAGAAAGTAGGAAACAGAGAAACGGAAACAAAAAGGATCCAACTAATTTCCTTTTAAAGCAAACTATGTTGGTCAAAGAGTACCGGATATGCATGCCGCTCACTGTGGATGAGTACAGGATCGGCCAGTTGTACATGATCAGCAAGCACAGCAATGAGCAGAGCGGAGGTGGTGAAGGGGTGGAGGTCGTCCGTAATGAACCCTGCACAGACCCCAAACATGGATCTGCAAACTGCCAACTTGGATGAGGAGGTTTGTTCCCATggttttttatttaacagaaactGCCTGGAACTTCTACCCATACACCATAACAGaGTATACGTGTTCTTTCCTACCGAGGTTCCATGTCAAGATTGAGACGCACTTTAAGAATGACAACGGCTGCAGCAAAAATGTGTTCGGCGATGACCCCACTCCAATGGACAACGTCTGCTTTTTGGATATTTT
>TCONS_00019536
AGGATCGGCCAGTTGTACATGATCAGCAAGCACAGCAATGAGCAGAGCGGAGGTGGTGAAGGGGTGGAGGTCGTCCGTAATGAACCCTGCACAGACCCCAAACATGGATCTGGTCAGATCACAGAGAAACGCATCTACCTCAAcagCAAACTGCCAACTTGGATGAGGAGGTTTGTTCCCATggttttttatttaacagaaactGCCTGGAACTTCTACCCATACACCATAACAGaGTATACGTGTTCTTTCCTACCGAGGTTCCATGTCAAGATTGAGACGCACTTTAAGAATGACAACGGCTGCAGCAAAAATGTGTTCGGCGATGACCCCACTCCAATGGACAACGTCTGCTTTTTGGATATTTTAAGTGACCCAATCCCTGAAAAAAATTACAAGAAGTCAGAGGATCTGAGCGACTGGGTGTCGGAGAAAACAGGCCGGGGACCCCTAGTGGATGGCTGGAGGAACGACACCAAACCCATCATGTGCTCCTACAAGAGAGTGACCTGCAGCTTTGAGGTTTACGGCTTCCAGGGAAGAACAGAAGACTTTGTTCACAGGAACATTCGTGACATTCTGTTGGTGGGACACAGACAGGCGGTGGCATGGATTGACGAGTGGCATGGAATGACTCTCGAGCAGGTGAGAGAGTTTGAGAGAAAACAACAGGAGGAGACCAACTGCAAACTCAAGAGTGACATTGCCAGCCCAGGCTCTGATCCTGCAATTCGACCCAGCTTCACTCGCTCCATCTCTGTTACGGATGAATCGTCACTGAAAAAGATGGGGGTTACGACTCTAGACATTCCAAGCTCTCAGTCCTCCCTCAAGGGTCCTGTGAGATTAAAATCAACCCCAGAATAA

Function

symbol description
pitpnc1b Predicted to enable phosphatidylinositol binding activity and phosphatidylinositol transfer activity. Predicted to act upstream of or within phospholipid transport. Predicted to be active in cytoplasm. Is expressed in several structures, including EVL; epidermis; periderm; pronephric duct; and sensory system. Orthologous to human PITPNC1 (phosphatidylinositol transfer protein cytoplasmic 1).

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005548 phospholipid transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-158 Predicted to enable phosphatidylinositol binding activity and phosphatidylinositol transfer activity. Predicted to act upstream of or within phospholipid transport. Predicted to be active in cytoplasm. Is expressed in several structures, including EVL; epidermis; periderm; pronephric duct; and sensory system. Orthologous to human PITPNC1 (phosphatidylinositol transfer protein cytoplasmic 1).

Ensembl:

ensembl_id ENSDARG00000022807

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019533 False 2089 mRNA 0.44 10 13424534 13453818
TCONS_00019534 False 772 processed_transcript 0.46 6 13424548 13441633
TCONS_00019535 False 693 nonsense_mediated_decay 0.46 6 13424551 13441595
TCONS_00019536 True 867 mRNA 0.49 9 13427967 13452967

Neighbor

gene id symbol gene type direction distance location
XLOC_009766 NA coding upstream 251836 13168872 ~ 13172698 (+)
XLOC_009765 NA coding upstream 308925 13112264 ~ 13115609 (+)
XLOC_009764 NA coding upstream 460657 12962960 ~ 12963877 (+)
XLOC_009763 cacng6b coding upstream 557983 12836143 ~ 12866551 (+)
XLOC_009762 u2af2a coding upstream 602766 12812214 ~ 12821768 (+)
XLOC_009768 NA coding downstream 45543 13499361 ~ 13501965 (+)
XLOC_009769 NA coding downstream 158836 13612654 ~ 13614188 (+)
XLOC_009770 josd2 coding downstream 229989 13683807 ~ 13706770 (+)
XLOC_009771 flcn coding downstream 364682 13818500 ~ 13847335 (+)
XLOC_009772 zgc:174888 coding downstream 401221 13855039 ~ 13859164 (+)
XLOC_009756 CR388102.6 non-coding upstream 1043688 12380730 ~ 12380846 (+)
XLOC_009755 CR388102.1 non-coding upstream 1124248 12300169 ~ 12300286 (+)
XLOC_009776 NA non-coding downstream 488255 13942073 ~ 13945576 (+)
XLOC_009777 NA non-coding downstream 496199 13950017 ~ 13954147 (+)
XLOC_009782 NA non-coding downstream 700172 14153990 ~ 14158725 (+)

Expression


Co-expression Network