G223545


Basic Information

Item Value
gene id G223545
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 1270492 ~ 1270927 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU253572
GCTTGCCATAGAACAGGACTACTGTTAATAATATACAATTCTGTTTATTTATATTCAAAATTGCTGCTGTTTGTATTATATAGGACATTAACCTCATTCAGTCAAGTTCATTAACATTTGGGCTTGACTTTGTGTGTGTGTACGTCTATGTGTATGTACCTGATGGTGCTGATGCAAATGAACAGCTGTTTTAGCATCACTTGGCAGCAGATGTCCAGCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGACTTCAGAGAACCGTCTGTGGACTTGATTGGCAGAGCAGAATCAGATATTCTCGCTGCAGCCAGCCAGACTCAATGGGCATCTGTGCCCGGGCCGATGCCAGGACAGGTGTATGTGTGTCACATGATTGGCATAGAAAGAGTGGTACTTGGCACCAATACTCTATGACGACACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU253572 True 436 TUCP 0.44 1 1270492 1270927

Neighbor

gene id symbol gene type direction distance location
CI01000052_01143235_01145343 NA coding upstream 123342 1143156 ~ 1147150 (+)
CI01000052_01044855_01046432 NA coding upstream 223875 1044855 ~ 1046617 (+)
CI01000052_00906265_00916799 SEMA3B coding upstream 353679 904556 ~ 916813 (+)
CI01000052_00836931_00841228 TMEM51A coding upstream 429059 835368 ~ 841433 (+)
CI01000052_00793472_00831585 KAZNA coding upstream 438539 793472 ~ 831953 (+)
CI01000052_01295531_01298937 NA coding downstream 23267 1294194 ~ 1299203 (+)
CI01000052_01368837_01373810 OPN7C coding downstream 97910 1368837 ~ 1374198 (+)
CI01000052_01383491_01401660 NA coding downstream 111223 1382150 ~ 1402229 (+)
CI01000052_01405500_01408668 TPP1, TAF10 coding downstream 132887 1403814 ~ 1408862 (+)
CI01000052_01440901_01449517 SUV39H1, SUV39H1B coding downstream 169974 1440901 ~ 1450860 (+)
G223430 NA non-coding upstream 737 1268682 ~ 1269755 (+)
G223410 NA non-coding upstream 26528 1234570 ~ 1243964 (+)
G223460 NA non-coding upstream 42710 1226560 ~ 1227782 (+)
G223520 NA non-coding upstream 92167 1176376 ~ 1178325 (+)
G223509 NA non-coding upstream 108183 1160163 ~ 1162309 (+)
G223547 NA non-coding downstream 1651 1272578 ~ 1273020 (+)
G223551 NA non-coding downstream 6807 1277734 ~ 1277991 (+)
G223552 NA non-coding downstream 7451 1278378 ~ 1278608 (+)
G223414 NA non-coding downstream 32721 1303648 ~ 1305065 (+)
G223464 NA non-coding downstream 64937 1335864 ~ 1336400 (+)
G223694 NA other downstream 778399 2049326 ~ 2104299 (+)
G224953 NA other downstream 2160209 3431136 ~ 3460136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G63534 NA non-coding NC_056706.1 CM032075.1 12640076 ~ 12640617 (+)