XLOC_009773 (grwd1)


Basic Information

Item Value
gene id XLOC_009773
gene name grwd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13860299 ~ 13870899 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019548
GCTTTAAACCACGTGGCGTGAAGCGGAAATCCGCCGCTTTCTCAAAATGTCCGCGTCCGACGAACACACGCTGCcgcaggaggaggaggatgagttTGAGGACATGGAGGCGAGTGAAAGCGACGAGGATGATATGGAAGGAGAAGAACAGAACGGGGACGGGCAGGAGAAAGTCTATGTGCCCGGTCTGCAGCCGCTTCAGCCGGGAGAAGAGCTGGAGATGGACCACTCCGCTTACCGCATGTATCACGAATGCCAGACCGGTGCTCCATGTCTGAGTTTTGATGTAGTGCTTGATGGAGAAGGCGACAGGAGAGAGCAGTTTCCCCTCTCTATGGTGCTGTGTGCTGGAACACAGGCAGACACTGCACTCAGCAACAGGCTTATTGTCATGCGCATGCACAACCTTCAGggaactgagaaaaaaaaagatgaagacAAAAGCAGTGATGAAGAAAGTGACGAAGATGAAGACGACGAAGACGAAGATAAGAAACCACAGTTGGAGCTGGCCATGATGCCACATTATGGAGGCATCAATAGAGTCAGAGTCACCCAGCGAGGGGAACAGACATTAGCAGCGGTGTGGTCGGAGAAAGGCCAGGTGGAGATTTTTGACCTTCGACTACAACTTGAAGCAGTGCATAATTCAACAGCGATGTCAGCCTTCATCAAGCAGGAGAAGGAAGCCACGCCCCTTTTTAGTTTTGCTGGTCATATGTCAGAAGGATTTGCCATTGATTGGTCACCCAAGGTGCCAGGACGCATGGTGAGTGGCGACTGTAAGAAGAACATTCATGTCTGGGAGCCACAGGAGGGCGGCACATGGAAAATAGACCAGCGGCCTTTCAGCTCACACAGCAAGTCTGTTGAAGACCTGCAGTGGTCTCCTACTGAAGCCACGGTCTTTGCTTCATGTTCAGTGGATCAGTCCATTCGCATATGGGACATCAGAGCACCACCCAATTCCATGCTTTCAGCCAATGAGGCTCATTCTTCAGATGTCAATGTTATCAGCTGGAACCGGACTGAACCTTTTATATTGTCCGGAGGAGATGATGGCCTCCTCAAGGTCTGGGATTTAAGGCAGTTTCAGTCTGGACGTCCGGTGGCCAGTTTTAAGCAGCACAGTGCACCTGTAACGTCAGTGCAGTGGAGCCCCGTTGACTCCAGTGTGTTTGCCGCCTCTGGAGCCGATGATGTTATCAGCCAATGGGATCTGTCGGTGGAGTCATGTGACATGGGAGGACAAGCAGAGGATGTAAAACAGCTGCCGCCACAGCTACTGTTCCTTCACCAGGGCCAGAAAGAAGTGAAGGAGCTCCATTGGCACCCGCAGATTCCCGGAGTCCTCATTTCCACAGCGCTGTCGGGATTCAACATCTTCAGAACTATTTCTGTGTAGAGTGCGTTTgtttatgagagagagagagattggccTGTTGTTTATTTCAGGCTGAAAGAGTGTGCAGGTGTGCCATTTTAAGTGTATATAGATGGATGAGCGGAATATTTAGGTATGCGTGACTCAtatgtatttgttcattttcctcGAAACCAAATTTCTTCCACTCCTTGAGGCTGTAATGATGTCATTGCATGATTAATTACTAAATGGTGCCTGTTAAAGAGCATTCTGAATCATC

Function

symbol description
grwd1 Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; pectoral fin bud; and segmental plate. Orthologous to human GRWD1 (glutamate rich WD repeat containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-9844 Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; pectoral fin bud; and segmental plate. Orthologous to human GRWD1 (glutamate rich WD repeat containing 1).

Ensembl:

ensembl_id ENSDARG00000004806

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019548 True 1646 mRNA 0.50 7 13860299 13870899

Neighbor

gene id symbol gene type direction distance location
XLOC_009772 zgc:174888 coding upstream 1135 13855039 ~ 13859164 (+)
XLOC_009771 flcn coding upstream 12964 13818500 ~ 13847335 (+)
XLOC_009770 josd2 coding upstream 153529 13683807 ~ 13706770 (+)
XLOC_009769 NA coding upstream 246111 13612654 ~ 13614188 (+)
XLOC_009768 NA coding upstream 358334 13499361 ~ 13501965 (+)
XLOC_009774 atg12 coding downstream 12973 13883872 ~ 13888705 (+)
XLOC_009775 si:ch211-149k23.9 coding downstream 27500 13898399 ~ 13905633 (+)
XLOC_009776 NA coding downstream 71174 13942073 ~ 13945576 (+)
XLOC_009777 NA coding downstream 79118 13950017 ~ 13954147 (+)
XLOC_009778 zgc:162509 coding downstream 95024 13965923 ~ 13976935 (+)
XLOC_009766 NA non-coding upstream 687601 13168872 ~ 13172698 (+)
XLOC_009765 NA non-coding upstream 744690 13112264 ~ 13115609 (+)
XLOC_009764 NA non-coding upstream 896422 12962960 ~ 12963877 (+)
XLOC_009782 NA non-coding downstream 283091 14153990 ~ 14158725 (+)
XLOC_009786 NA non-coding downstream 590363 14461262 ~ 14493478 (+)
XLOC_009787 NA non-coding downstream 603957 14474856 ~ 14481801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G97191 NA non-coding CI01000016 null 5894654 ~ 5908304 (-)