XLOC_009776


Basic Information

Item Value
gene id XLOC_009776
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13942073 ~ 13945576 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021902
TTGCACTGGCATTCAGCATGTCTGAGCCTGAGAGAACATTctgaaaaaacatttgaaaacataCTGGATTACCAACGTTTCAGAATAATCAGTCAAATTAATGATTCTCTTCATGTTTCGGGATGCTATATTATTCGTGCGAAAGTTTACATACAAGGAAAAAAGAAAGTGTTGAAATGCCTTACACATCCCATATGAGTAAACATAAGAAGATCAATTACAGAAGATTCACGACTTGACCAGAAAACTGCTTATTACAGTCTTTtggttttgattttgtttttgaaaattgaTTTTGTTAAATGTGAAGGACTGAACATACATCAACAGGAGAGCAAGAAAacttaaaaaagattaaaaaaaaattgtggagcCCATCAACAATGGAGGAACCCATGGATTCTGGAGCCCCCCAAACCGTAAAATATGACCCAAAATCAGAAACTGTAACGTTACCCAATGGGCTAGTGTCTGTGGCCGGTGTTACAGTGGTGACAGGGGGAGCAGAGCTGTCCTGCGGATCCTGTATGTTGGCTTTTGGGGTTTGGGGAACTCTGGTCGGACTGAGTGTTGTGTCAGTGGGTTTGTGGGACAATTCAACACACGTGAACAGTGGTCTGTCACACCTTCTGGCACTTGGGTTGGTGCTGCTTCTCACCAGCTTCAGTCTGGTAGTTGTGATCTTTTTCCTTCGTTTCTTAATGAAACAGAGAAGaatggcagccagaagagaaaGGGCAGAAGCCAACCTAGTGCTGGTGAATGACTATGcagaagttattttaaaaagagtCACTGTGTGAAGGAGCAGATTAATGAAAACCTATGTTGTGATATTTCTAAATGTTGAATAAATCAGACTCTGTGCTATAGGAA

Function

GO:

id name namespace
GO:0010605 negative regulation of macromolecule metabolic process biological_process
GO:0048731 system development biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0051172 negative regulation of nitrogen compound metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009890 negative regulation of biosynthetic process biological_process
GO:0031324 negative regulation of cellular metabolic process biological_process
GO:0031327 negative regulation of cellular biosynthetic process biological_process
GO:1902679 negative regulation of RNA biosynthetic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051253 negative regulation of RNA metabolic process biological_process
GO:1903507 negative regulation of nucleic acid-templated transcription biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0048869 cellular developmental process biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0007399 nervous system development biological_process
GO:0045934 negative regulation of nucleobase-containing compound metabolic process biological_process
GO:0032502 developmental process biological_process
GO:0010558 negative regulation of macromolecule biosynthetic process biological_process
GO:2000113 negative regulation of cellular macromolecule biosynthetic process biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0099512 supramolecular fiber cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021902 True 876 lncRNA 0.40 2 13942073 13945576

Neighbor

gene id symbol gene type direction distance location
XLOC_009775 si:ch211-149k23.9 coding upstream 36440 13898399 ~ 13905633 (+)
XLOC_009774 atg12 coding upstream 53368 13883872 ~ 13888705 (+)
XLOC_009773 grwd1 coding upstream 71174 13860299 ~ 13870899 (+)
XLOC_009772 zgc:174888 coding upstream 82909 13855039 ~ 13859164 (+)
XLOC_009771 flcn coding upstream 94738 13818500 ~ 13847335 (+)
XLOC_009777 NA coding downstream 4441 13950017 ~ 13954147 (+)
XLOC_009778 zgc:162509 coding downstream 20347 13965923 ~ 13976935 (+)
XLOC_009779 zgc:162509 coding downstream 47709 13993285 ~ 14025096 (+)
XLOC_009780 rusc1 coding downstream 83707 14029283 ~ 14055309 (+)
XLOC_009781 si:dkey-85k15.11 coding downstream 133172 14078748 ~ 14091845 (+)
XLOC_009769 NA non-coding upstream 327885 13612654 ~ 13614188 (+)
XLOC_009768 NA non-coding upstream 440108 13499361 ~ 13501965 (+)
XLOC_009766 NA non-coding upstream 769375 13168872 ~ 13172698 (+)
XLOC_009765 NA non-coding upstream 826464 13112264 ~ 13115609 (+)
XLOC_009764 NA non-coding upstream 978196 12962960 ~ 12963877 (+)
XLOC_009782 NA non-coding downstream 208414 14153990 ~ 14158725 (+)
XLOC_009786 NA non-coding downstream 515686 14461262 ~ 14493478 (+)
XLOC_009787 NA non-coding downstream 529280 14474856 ~ 14481801 (+)
XLOC_009788 BX324006.1 non-coding downstream 533584 14479160 ~ 14484367 (+)

Expression


Co-expression Network