XLOC_009778 (zgc:162509)


Basic Information

Item Value
gene id XLOC_009778
gene name zgc:162509
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13965923 ~ 13976935 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019553
GCGAATATCAGTAACAATCGCGAATTTACAGTCATTGCTACAACTAATTAAAAAGTGGTCTTCTCCTATGTAACACCCACGCAGAGAGGCAGCTAGTCGGACGGTCCATGTTGGGAATGCGTCAATACAGGAAGTCAGTTTGCGTTCACTTGTTTGAAGTATTATTGAAGAAACTTTCCTGAAGCATCTGCGGTCGTATCATCCATTTCATCAGATCCCATTGGGGCTTGAAGCATTTAACTGGGTTTCGGCAGGCAACAAGAAAGCCATGAGTTCTGCAATCTCAAAATCTACTCAGAGCCTCGCTACTGCTGAGGACATGAGGGATCAAACCAAACTGATAATGCATCCCTATGTCAACTGGGAAAAGTATCTGACTCCGGCGCCTCTATCTATAGCCATTCTGGGAGAGCTGGTTTTCATCTCATCCTCAAAAGATTTCTCTATCAATAAAAATCCTCCTAAAGAGGGTTACAAATTCATCAAATACCCTGATTCTTTCCGTGCTTGCCTCATGCAAGTGTGCAACACTGGTTGGCGGTCATTTAATGAAGCCCATACGAGCATGGATCAGATCCATCTTTATACGGCCCAAGTTCCCGATTACATGAAGAATGCTGTGAAGATTCTGTTCCAAGATGATGATGAAGTTGTCAAAGCGCTTCTTCCTGATCAGATTGACAATATCAGAGAGATCGCAGATGAATGTCTGACGCTGGCTGCTGCTACTGAAAAGAGTTTTGGTAATGTCATCAATATCATCCAAGAGCTGCTGGAAGCTTGTATGAATGCAAACCGCTTCTATGGGGAAGAGATGGAGGCCATGAGGAAGAAGATTGAGGAGAGCAAACTGAGGAAGCAGTCATCAGAAGAAACAAAGAAAAGGACTGAGAAAGCAGTGAAAGCTGTGGAGAAGCAGCTGGATGAGGCTCAAGAGAGCTACAAGAAAGCTCTGGATTCTCTTCCTGGTGGATGGGAAATGATTGGCATGGACTTAGTTGGTGGGTTAACACAGAGCGTTACAGGCCTGCTTAATGGAGTGACGTTTCTTATTACCCACCCAGTCAGAAGTGCATGTTCTGCAACAACAAAGATCGCTAGTACCGTGCACCAGATCAGAGATCAGGAGAGAGATGTAGTTGCTGAAATAAACGCATACAGTAAGTCTGCTGCAATTTTAAGTTGTGTCCAGAATATCCAGCAGCTAATGAATGTGAATAGTGAGGGTGATGACATTGCCTGGAAAGATCTGTTTGATCAGGAGAACAATTGTGCAAAAACTACTTTTATGGCACAACAGCTTGAACGAATCAGTGAAGAATTAAATCAAGTCTCTGACTGCTCAAGTAAGTTTCAGGCTCTGAAGTTGTGCTGCATGGGCATAAAAATATGCAATGAGCTGGAACGTTATGCACCTGATGGCAAATGTGAGAAAAACAAAAGTAAGAAGATTATAAAGGAGGTTTTGGAACTGATCCAGCTTGCACGGGTTTTTGACTGCAAAAGCAAAGATGTGACAAATTCTCCAGCCATTTCTCCAAAGCCACCAATGATGAATAAAGAAGAAATCAAATCAAAGAACATGAGTCCTGCACAGAAGGCCTCACAGAATGCAAGATTCACCATAGAGCAGACCCGAGCTCAGCTGAACAAGTCCAGAGAGACATATGAGAAGTGTGTAGAGAACCTTGAGAACAATCAGAAAGAATTGACTGAAATCCTGATCACTATGAGAAACTGTGACCTGAAAGAGATCGACTTCAGAACCACCATAGAGATGCTGGGCAAAGGAATGGATGCCATGGGGAGAGTGAAGGAGCAGTGGGAGGAGATGGTTCACTTCTTTCAGATGGTTTCTGCCATTGTGAAAACCAGTCTGAGCAAAACTCTCACAAACTTCGTCTCCACATCTGAGAACACACAAACCCTTCCCTACAATAAAAAGCTCTTCTCAAAAGATCTGCTCTACACTCAGGCCTTCCAAGCCAGTAACATTGCCAGTCTGGTCCATATGATCTCTGCAACATACACTGATGTTTCCAGCAGGTACCTGATGGATAGAGTCAGCTCACTGGGTAAACTGATGGCCATGGATAAAAATAAGCCAGAATTTGAGCATGAGCGACAACAGCTCCAGAACGCCTGTGATGAGGCAGAGAAAGGCATCTTAAGGCTTGTGGAGAAGAATAAAAAGGAGTTTGACAGAAAGAGCATAGAAAGACTGGAAAGAATCAATCGGGAATTGCTTCCCATTCTGCCTGCTGCACCTCCAGAGCAAATCAAGAGCATTCAAGAGGCTGTTCAAGCTGGATTCACTGAAGATGAAGGAGCAGCAGCATATTACTGAAACACTGAAGTGTTTAAAAGCTCACTATGTACATGATAGTTAATCTTTGCAGTTAAGTAACTTGACATTTTGAGTCTCCCTAAGGAGTCTGAATAAATATCCATATATTTTGCTATTCTGACTGCACTTATAGCTTGTTTAGTCATTTGTTAATATAGCTTTAACAACTGCAGAAAACACAGCCTTACAATAAGccatagttacattttttttttctgttatgatTTTGTCTTTATGGTTACTTTTATGTGAATCTCTTATGTTTAATTATGAGGCTGTTGAAGTAATAAACATATATGCATTGCA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-100 No description available

Ensembl:

ensembl_id ENSDARG00000070604

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019553 True 2653 mRNA 0.42 2 13965923 13976935

Neighbor

gene id symbol gene type direction distance location
XLOC_009777 NA coding upstream 11776 13950017 ~ 13954147 (+)
XLOC_009776 NA coding upstream 20347 13942073 ~ 13945576 (+)
XLOC_009775 si:ch211-149k23.9 coding upstream 60290 13898399 ~ 13905633 (+)
XLOC_009774 atg12 coding upstream 77218 13883872 ~ 13888705 (+)
XLOC_009773 grwd1 coding upstream 95024 13860299 ~ 13870899 (+)
XLOC_009779 zgc:162509 coding downstream 16350 13993285 ~ 14025096 (+)
XLOC_009780 rusc1 coding downstream 52348 14029283 ~ 14055309 (+)
XLOC_009781 si:dkey-85k15.11 coding downstream 101813 14078748 ~ 14091845 (+)
XLOC_009782 NA coding downstream 177055 14153990 ~ 14158725 (+)
XLOC_009783 dap3 coding downstream 224466 14201401 ~ 14215617 (+)
XLOC_009769 NA non-coding upstream 351735 13612654 ~ 13614188 (+)
XLOC_009768 NA non-coding upstream 463958 13499361 ~ 13501965 (+)
XLOC_009766 NA non-coding upstream 793225 13168872 ~ 13172698 (+)
XLOC_009786 NA non-coding downstream 484327 14461262 ~ 14493478 (+)
XLOC_009787 NA non-coding downstream 497921 14474856 ~ 14481801 (+)
XLOC_009788 BX324006.1 non-coding downstream 502225 14479160 ~ 14484367 (+)
XLOC_009789 BX005402.1 non-coding downstream 502616 14479551 ~ 14508200 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05956820_05958904 NA coding CI01000016 null 5956583 ~ 5958917 (+)