XLOC_009780 (rusc1)


Basic Information

Item Value
gene id XLOC_009780
gene name rusc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14029283 ~ 14055309 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019561
CATTGTCCCTCTTTAGGGAAATGTGCCGCCTGAATATACAAGATGAATGCAGAGCCGATCCTAAAGTCTCCCAACAAATGGGCTCATCAGTAAGTGAAGGCAGCCTTAGGACTATTTGTGGTGATAAAGCTGCTCACACCAAAAAgattcaaaatgaagatgacctGGAGGTCAGGGGAATGGCAGATGGAGCATGGACTTTGGAGTCCAGGACAACAGCTGTCCGCAGCTTTTCTTTTGCCGGATCTGAGCAGAAGAATGGGGCCTGGATGGGAGAGGATGTGAGGTCCTCAATGAGTGCTGAAGGGCTGTCTTCTGTATGCCTGCTAGAAAAGAAAACTCTTGTCAATTCAGTCAGTGTGGCAGTGGAGGCCATTTTGGCTCAGTTCAGTTCATCCAGGACTGTTGTTCAGAAGAGCCTTTCTGGAGACAGCAGTGTAAATCCCTCTCTTGGTCGTCTGGTACTGCAGTGCCTTTGCCCAGCCCTGCGCAGCCTGCTCTGTGATGGACTCAAGCCCCACCAGAGTGACCTCATTGCAGGCAGAAGGCCAAATTCACCCTGGGGTTTGGTTCAGGCCTCCACCAAACCAGGCCCGAGCACACAGGCTTTGCACAGCCTTCAGACTAAAGTAGCAGGTCTTCATCAGCTAAGGCAGAGCAGGCACAGATTCAACGCCTTCCTGTTTGGCCTTCTCAATATCAAGCTTTTGGATTATTGGCTTTCCCATCTGCAGTCTTGCAGCGATGTGCTGGAAACTTTTTATCGGCCTACTTCCTTCATGCGTCTGTCACTCACTTCTTGTCAGTCTCTTTTTGAGGAGCTTCTTCTCCTGCTCCAGCCTCTTTCTCTGCTGACCTTCAACCTGGACCTGCTGTTTCAGCATCATCACCTAGACCCTTCTTCTCCAACTCTCACCCCAGCCAGCCACACGTCTGACATATGCAGCCCACCAAATGAAGACTTCAGCTTCCACCTGTCACCCAAGGGCCTTTTCCATGGAGGTGTCCATCGTACTGGAAGCATCTTAGAGCAAGACCACAGTTTGAGTTTGGACACCAACCCTAATTCGTTTTTTTCGAGTCATGTTCTTGATGTGTCAGCATATCGCAATCCAATTTCTCTGTCATCAGGCATCAACAAAGAGGAAGCTGATCCGCCATTATCATGGTTTAACGGGAATGAGATCTCTGCACCTCTTAATGCTGGAAGTCTTTCCCAGCAAGCGGGCCAGGCTCTTCAGCAAGGCTGGGGGGCAGTCATGCGCTTGGGGGAGCGTTTAGGGCAGAACTTTGGTTTGGCCACCACTACAGAGAATGCGAATGGTCCTTACTCACCAGATAATTCCAAGACAGGCTACTCAGCAACACCAAGAAGCCCAGTTGAAAACAGGCAACAACCTAGAGAGGATCTTTCCCTGTGGGATAGTGGAGCTGCTATTCCTTGGGGTCTTGGACGGCTCTTTGGTGCTTCTAAGAGCCCCAACAACCCACCGACCACCAGGCGCCCATCTCAGTGGCTCTCCCCTGGTGTATCCGTCCTTTCCCGGATAGTGAATCTTAGCCAGGGTTCTCCACCTGAGAAAAGAGAGCTTCAGAGAAGCAATGATAAAGAGCAAGATGAGAATGAAAATATTAATGAACCAAGAGATCAGCCAAAGCCCCTAAGGGTGGTCAGAACTCTGTGTGATCACACTGGCACTGGGGCCGAGCTCAGCTTCAGGAAGGGAGAGGAGCTTGTTCTGTTGGGGGGTGTCGACCACGACTGGATTCGATGTCGCCAAGGTCACCGAGAGGGCCTTGTTCCCATTGGTTATGCTTCACTTATCATGTGACTTATCTTTATTCTgcctgtatgtttgtgtgaaagaATATCAGGGGATCACATATACGGAAAACAAGACCATATATAGACGTAGGTATTAGTAGCCGTGTTTAATGTTTCTCTTTGACCCTCATTGCCTGGTTTGTGAagtctggaatattttctgtgatatataaatatatatatataggaaataactcGCTATGAATTACTGTATaaatcttaaatatatatttagattttacaaagatagatagacagataaacaAGAAATAGAAATGGCTAATACTTAAGAGTCAAgtttaacatgaaataaaatcatcatattgtatttattattaggtGTTCTGCCATACAAAAAACCCGGCTTGGCCAGAAATGCACTTA
>TCONS_00019562
GTGATAAAGCTGCTCACACCAAAAAgattcaaaatgaagatgacctGGAGGTCAGGGGAATGGCAGATGGAGCATGGACTTTGGAGTCCAGGACAACAGCTGTCCGCAGCTTTTCTTTTGCCGGATCTGAGCAGAAGAATGGGGCCTGGATGGGAGAGGATGTGAGGTCCTCAATGAGTGCTGAAGGGCTGTCTTCTGTATGCCTGCTAGAAAAGAAAACTCTTGTCAATTCAGTCAGTGTGGCAGTGGAGGCCATTTTGGCTCAGTTCAGTTCATCCAGGACTGTTGTTCAGAAGTTTCACTCAGTAGATAAGAGCCTTTCTGGAGACAGCAGTGTAAATCCCTCTCTTGGTCGTCTGGTACTGCAGTGCCTTTGCCCAGCCCTGCGCAGCCTGCTCTGTGATGGACTCAAGCCCCACCAGAGTGACCTCATTGCAGGCAGAAGGCCAAATTCACCCTGGGGTTTGGTTCAGGCCTCCACCAAACCAGGCCCGAGCACACAGGCTTTGCACAGCCTTCAGACTAAAGTAGCAGGTCTTCATCAGCTAAGGCAGAGCAGGCACAGATTCAACGCCTTCCTGTTTGGCCTTCTCAATATCAAGCTTTTGGATTATTGGCTTTCCCATCTGCAGTCTTGCAGCGATGTGCTGGAAACTTTTTATCGGCCTACTTCCTTCATGCGTCTGTCACTCACTTCTTGTCAGTCTCTTTTTGAGGAGCTTCTTCTCCTGCTCCAGCCTCTTTCTCTGCTGACCTTCAACCTGGACCTGCTGTTTCAGCATCATCACCTAGACCCTTCTTCTCCAACTCTCACCCCAGCCAGCCACACGTCTGACATATGCAGCCCACCAAATG
>TCONS_00019563
TTTGAGAGAGATGTCAGCACAGTTCCGCTGTCCGCAGCTTTTCTTTTGCCGGATCTGAGCAGAAGAATGGGGCCTGGATGGGAGAGGATGTGAGGTCCTCAATGAGTGCTGAAGGGCTGTCTTCTGTATGCCTGCTAGAAAAGAAAACTCTTGTCAATTCAGTCAGTGTGGCAGTGGAGGCCATTTTGGCTCAGTTCAGTTCATCCAGGACTGTTGTTCAGAAGTTTCACTCAGTAGATAAGAGCCTTTCTGGAGACAGCAGTGTAAATCCCTCTCTTGGTCGTCTGGTACTGCAGTGCCTTTGCCCAGCCCTGCGCAGCCTGCTCTGTGATGGACTCAAGCCCCACCAGAGTGACCTCATTGCAGGCAGAAGGCCAAATTCACCCTGGGGTTTGGTTCAGGCCTCCACCAAACCAGGCCCGAGCACACAGGCTTTGCACAGCCTTCAGACTAAAGTAGCAGGTCTTCATCAGCTAAGGCAGAGCAGGCACAGATTCAACGCCTTCCTGTTTGGCCTTCTCAATATCAAGCTTTTGGATTATTGGCTTTCCCATCTGCAGTCTTGCAGCGATGTGCTGGAAACTTTTTATCGGCCTACTTCCTTCATGCGTCTGTCACTCACTTCTTGTCAGTCTCTTTTTGAGGAGCTTCTTCTCCTGCTCCAGCCTCTTTCTCTGCTGACCTTCAACCTGGACCTGCTGTTTCAGCATCATCACCTAGACCCTTCTTCTCCAACTCTCACCCCAGCCAGCCACACGTCTGACATATGCAGCCCACCAAATGAAGACTTCAGCTTCCACCTGTCACCCA

Function

symbol description
rusc1 Predicted to be active in cytoplasmic vesicle. Orthologous to human RUSC1 (RUN and SH3 domain containing 1).

GO:

id name namespace
GO:0031410 cytoplasmic vesicle cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-100922-274 Predicted to be active in cytoplasmic vesicle. Orthologous to human RUSC1 (RUN and SH3 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000078125

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019561 False 2209 mRNA 0.47 9 14029283 14055309
TCONS_00019562 False 855 mRNA 0.51 8 14029403 14050929
TCONS_00019563 True 810 mRNA 0.51 8 14033121 14050956

Neighbor

gene id symbol gene type direction distance location
XLOC_009779 zgc:162509 coding upstream 4187 13993285 ~ 14025096 (+)
XLOC_009778 zgc:162509 coding upstream 52348 13965923 ~ 13976935 (+)
XLOC_009777 NA coding upstream 75136 13950017 ~ 13954147 (+)
XLOC_009776 NA coding upstream 83707 13942073 ~ 13945576 (+)
XLOC_009775 si:ch211-149k23.9 coding upstream 123650 13898399 ~ 13905633 (+)
XLOC_009781 si:dkey-85k15.11 coding downstream 23439 14078748 ~ 14091845 (+)
XLOC_009782 NA coding downstream 98681 14153990 ~ 14158725 (+)
XLOC_009783 dap3 coding downstream 146092 14201401 ~ 14215617 (+)
XLOC_009784 gba coding downstream 161272 14216581 ~ 14231312 (+)
XLOC_009785 polr3c coding downstream 194237 14249546 ~ 14280600 (+)
XLOC_009769 NA non-coding upstream 415095 13612654 ~ 13614188 (+)
XLOC_009768 NA non-coding upstream 527318 13499361 ~ 13501965 (+)
XLOC_009766 NA non-coding upstream 856585 13168872 ~ 13172698 (+)
XLOC_009786 NA non-coding downstream 405953 14461262 ~ 14493478 (+)
XLOC_009787 NA non-coding downstream 419547 14474856 ~ 14481801 (+)
XLOC_009788 BX324006.1 non-coding downstream 423851 14479160 ~ 14484367 (+)
XLOC_009789 BX005402.1 non-coding downstream 424242 14479551 ~ 14508200 (+)

Expression


Co-expression Network