XLOC_009781 (si:dkey-85k15.11)


Basic Information

Item Value
gene id XLOC_009781
gene name si:dkey-85k15.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14078748 ~ 14091845 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019564
AGGATCCAGGGCGCGAAACTTGGTGCATGACTGATGGAACTTTTGCTTCAAGTCGTGTTTAAAACTAACTTAATCGACGAATATATGAAGGATTTCGGTGGATGTCGTCAAATGTTTGACAAGAACCATCATAAAAAAGGAAACGAAACTCGCATTTCCATGGGAAAAACTGATTTTGTTGCGGAGCGAACTGACAATCTGAAAGATCCAGAACCTTACAGAATGGATCATGAAGATGCTgaagaacaaacagACCAGATGGAGGTGAAAGAGCAAAAACAAGACCTGAATGCTGAGGATGGGAAGCGCAACTTCAAGACTCAAGGAACAAAGACAAAACGTCCGCACACCTGTCCtctgtgtggaaagagtttcagaaaAAAAGTGAAACTCGACATGCACATAGATACTCACGTTGGAGAGAAACTGTACATCTGCACtgaatgtggaaagagtttttcaTGGCTTGACAGTTATAAACTGCACCagaaaacacatgaagaaaagagAGATCATGAGTGTTTGGAGTGCGGGAAGAGCTTCACTAAAGCTCGACATCTGAAACAGCACAGAcaaattcacactggagaaaaaacgCACAAGTGCTTATATTGTGACAAGAGTTTCAGTGATTCCTGGCCATCTAAATCAGCACCAccgaattcacactggagagaagccgtttacctgcactcagtgtggtcgTGGTTTTATATCAGCATCAAGTCTAAAACAACACATGATAGTTCACTCAGATGAGAAGCCTTATGCATGTCTGTTCTGTGAAAAGAGATTTTCACGTCGTGGTGAATGTAAGCAGCATCAGAAAACACACAGTGGCAAGAGAG
>TCONS_00019565
ATCCAGGGCGCGAAACTTGGTGCATGACTGATGGAACTTTTGCTTCAAGTCGTGTTTAAAACTAACTTAATCGACGAATATATGAAGGATTTCGGTGGATGTCGTCAAATGTTTGACAAGAACCATCATAAAAAAGGAAACGAAACTCGCATTTCCATGGGAAAAACTGATTTTGTTGCGGAGCGAACTGACAATCTGAAAGATCCAGAACCTTACAGAATGGATCATGAAGATGCTgaagaacaaacagACCAGATGGAGGTGAAAGAGCAAAAACAAGACCTGAATGCTGAGGATGGGAAGCGCAACTTCAAGACTCAAGGAACAAAGACAAAACGTCCGCACACCTGTCCtctgtgtggaaagagtttcagaaaAAAAGTGAAACTCGACATGCACATAGATACTCACGTTGGAGAGAAACTGTACATCTGCACtgaatgtggaaagagtttttcaTGGCTTGACAGTTATAAACTGCACCagaaaacacatgaagaaaagagAGATCATGAGTGTTTGGAGTGCGGGAAGAGCTTCACTAAAGCTCGACATCTGAAACAGCACAGAcaaattcacactggagaaaaaacgCACAAGTGCTTATATTGTGACAAGAGTTTCAGTGATTCGTTGAAGATGAAGTCACATGAGCGAATTCACACTGAAGAGAAGCCTTACTACTGTACtctgtgtggaaagagcttcagaAAAAATAGTAAGCTTACCAATCATCTAAATGTTCA
>TCONS_00021903
AAACGTCCGCACACCTGTCCtctgtgtggaaagagtttcagaaaAAAAGTGAAACTCGACATGCACATAGATACTCACGTTGGAGAGAAACTGTACATCTGCACtgaatgtggaaagagtttttcaTGGCTTGACAGTTATAAACTGCACCagaaaacacatgaagaaaagagAGATCATGAGTGTTTGGAGTGCGGGAAGAGCTTCACTAAAGCTCGACATCTGAAACAGCACAGAcaaattcacactggagaaaaaacgCACAAGTGCTTATATTGTGACAAGAGTTTCAGTGATTCGTTGAAGATGAAGTCACATGAGCGAATTCACACTGAAGAGAAGCCTTACTACTGTACtctgtgtggaaagagcttcagaAAAAATAGTAAGCTTACCAATCATCTAAATGTTCACTCTGGAGAGAAGCCATTTACCTGTACTCAGTGTGGTCATGGTTTTAGGTCAGCATCAAAGCTAAAGCAACACATGGTGATTCACTTAGATGAGAAGCTTTACGTATGCTggtactgttCACGTCGTGGTGATTGTAAGCAGCACCAGAAAACACACAGTGGCAAGAGAGATCATGAGTGTTTGGAGAGCGGGAAGAGCTTTACTACAGCTGGCCATCTAAATCAGCACCACCGaaatcacactggagagaggcctttTACCTGCACTCTGTGTGGTCGTGGTTTTATATCAGCATCAAGTCTAAAACAACACATGATAGTTCACTCAGATGAGAAGCCTTATGCATGTTCGTTCTGTGAAAAGAGATTTTCACGTCGTGGTGATTGTAATAGGCACCAGAAGACACACAGTGACAAGAGAGATCATGAATGTTTGGAGTGCGGGAAGAGCTTTACTACAGCTGGCCATCTAAATCAGCACCAccgaattcacactggagagaagccgtttacctgcactcagtgtggtcgTGGTTTTATATCAGCATCAAGTCTAAAACAACACATGATAGTTCACTCAGATGAGAAGCCTTATGCATGTCTGTTCTGTGAAAAGAGATTTTCACGTCGTGGTGAATGTAAGCAGCATCAGAAAACACACAGTGGCAAGAGAGATCATGTGTGTTTAGAGTGCGGGAAGAGCTTTACTACAGCTGGCCATGTGAAACGGCACCTActaattcacactggagaaaaaccgtaTAAGTGCTCATATTGTGACAAGTGTTTCAGTCAATCTTCAGCAATGAAATCACATGagcgaattcacactggagagaggcctttTACCTGCTCTCAGTGTGGTCGTAGTTTTATATCAGCATCAAGTCTAAAACAACACATGATAGTTCACTCAGATGAGAAGCCTTATGCATGTCTGTTCTGTGAAAAGAGATTTTCACATCGTGGCAACTGCAAGCAGCACCAGAAAACACACAGTGGCAAGAGAGATCATGTGTGTTTAGAGTGCGGGAAGAGCTTTACTACAGCTGGCAATGTGAAACGGCACCAacgaattcacactggagaaaaaccgtacAAGTGCTCATATTGTGACAAGAGATTCAGTCAATCTTCAGCAATGAAATCACACGagcgaattcacactggagagaagccttacTACTGTCCTCCATGTCAGAAGAGTTTTCGATTTTTATCAAGTCTTCTCAGACACATGAAGAAATgtgtttctttaaGACacatatatataagcaatatctcA

Function

symbol description
si:dkey-85k15.11 Predicted to enable metal ion binding activity.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000090817

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019564 False 848 mRNA 0.42 4 14078748 14089469
TCONS_00019565 False 746 mRNA 0.41 3 14078751 14088783
TCONS_00021903 True 1698 lncRNA 0.42 4 14088371 14091845

Neighbor

gene id symbol gene type direction distance location
XLOC_009780 rusc1 coding upstream 23439 14029283 ~ 14055309 (+)
XLOC_009779 zgc:162509 coding upstream 53652 13993285 ~ 14025096 (+)
XLOC_009778 zgc:162509 coding upstream 101813 13965923 ~ 13976935 (+)
XLOC_009777 NA coding upstream 124601 13950017 ~ 13954147 (+)
XLOC_009776 NA coding upstream 133172 13942073 ~ 13945576 (+)
XLOC_009782 NA coding downstream 62145 14153990 ~ 14158725 (+)
XLOC_009783 dap3 coding downstream 109556 14201401 ~ 14215617 (+)
XLOC_009784 gba coding downstream 124736 14216581 ~ 14231312 (+)
XLOC_009785 polr3c coding downstream 157701 14249546 ~ 14280600 (+)
XLOC_009786 NA coding downstream 369417 14461262 ~ 14493478 (+)
XLOC_009769 NA non-coding upstream 464560 13612654 ~ 13614188 (+)
XLOC_009768 NA non-coding upstream 576783 13499361 ~ 13501965 (+)
XLOC_009766 NA non-coding upstream 906050 13168872 ~ 13172698 (+)
XLOC_009787 NA non-coding downstream 383011 14474856 ~ 14481801 (+)
XLOC_009788 BX324006.1 non-coding downstream 387315 14479160 ~ 14484367 (+)
XLOC_009789 BX005402.1 non-coding downstream 387706 14479551 ~ 14508200 (+)

Expression


Co-expression Network