Gene
RNA
| Item | Value |
|---|---|
| gene id | G223990 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000052 |
| NCBI id | null |
| chromosome length | 3494004 |
| location | 2820468 ~ 2820698 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU254063 | True | 231 | lncRNA | 0.26 | 1 | 2820468 | 2820698 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000052_02646977_02647792 | NA | coding | upstream | 172644 | 2646223 ~ 2647824 (+) |
| CI01000052_02622010_02627854 | NA | coding | upstream | 192158 | 2620241 ~ 2628310 (+) |
| CI01000052_02597704_02601005 | NA | coding | upstream | 218616 | 2597556 ~ 2601852 (+) |
| CI01000052_02591303_02592790 | NA | coding | upstream | 227671 | 2588859 ~ 2592797 (+) |
| CI01000052_02468269_02501109 | HMCN2 | coding | upstream | 319294 | 2468269 ~ 2501174 (+) |
| CI01000052_02845585_02849894 | NA | coding | downstream | 24852 | 2845550 ~ 2849978 (+) |
| CI01000052_02850485_02858740 | NA | coding | downstream | 29657 | 2850355 ~ 2858861 (+) |
| CI01000052_03401048_03405703 | NA | coding | downstream | 579572 | 3400270 ~ 3406312 (+) |
| CI01000052_03453140_03462799 | NA | coding | downstream | 632254 | 3452952 ~ 3462799 (+) |
| CI01000052_03484560_03485959 | NA | coding | downstream | 663862 | 3484560 ~ 3486253 (+) |
| G223986 | NA | non-coding | upstream | 5160 | 2815081 ~ 2815308 (+) |
| G223866 | NA | non-coding | upstream | 294694 | 2520202 ~ 2525774 (+) |
| G223865 | NA | non-coding | upstream | 300827 | 2519404 ~ 2519641 (+) |
| G223864 | NA | non-coding | upstream | 302461 | 2517478 ~ 2518007 (+) |
| G223995 | NA | non-coding | downstream | 3842 | 2824540 ~ 2824758 (+) |
| G223996 | NA | non-coding | downstream | 5324 | 2826022 ~ 2826270 (+) |
| G224000 | NA | non-coding | downstream | 9644 | 2830342 ~ 2830547 (+) |
| G224005 | NA | non-coding | downstream | 38423 | 2859121 ~ 2859352 (+) |
| G224606 | NA | non-coding | downstream | 98784 | 2919482 ~ 2919722 (+) |
| G223694 | NA | other | upstream | 716169 | 2049326 ~ 2104299 (+) |
| G223545 | NA | other | upstream | 1549541 | 1270492 ~ 1270927 (+) |
| G224953 | NA | other | downstream | 610438 | 3431136 ~ 3460136 (+) |
