XLOC_009783 (dap3)


Basic Information

Item Value
gene id XLOC_009783
gene name dap3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14201401 ~ 14215617 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019566
ACAAACCTTGACCTCTTGGTCGTCTTCGTCATTGACGTTATGACGTAACTTCCGACGTCTGTTGAAACAGACATGGCGACCTCCATCGCCCGTAGCCCGTGACAGATCGACCGTTCATGTAAACCAGCATTTGGAGGTTATCGATTTACATGAAGCGCTTGAGAGACACGTAGTTTTTCAATCATCTGTCGGGTCGTGTCTAGAGaaaaTGAATCTGCACAAACTGTCTTTGCGATTGCGACCAGCAGTAACGCAGAAGTTCAGGTGTCTCAGCATCCAGAGCAGTGGCCAGGAGCTGGAGGCGGTTGCTGCGGAAACACTATCAGCTGAGCCAAATATGCTTTCAGTCTTCAGAACATCAGAGCAGGATCCGacaTGTCATTCTGAAACACACACTGGGCAGTACTACACGCTCCCCCCAACTCACATCCAGAAACTCTTCCCTCATGGACTCCCCCCACGCTTTCAGATGCAGGTTAAGACTTTTAATGAGGGCTGCGTGATGGTCAGGCCAGCAGCGCTGGAGCTCATCTCATATCTCAAAAAAGCTGATTACAACAAACCTCCTCTACGTTATGTACTCTATGGACAGACGGGCTCAGGGAAGTCCATTTCTCTGTGTCACACTCTGCATTACTGCTACACTCAGGGCTGGTTGATCCTGCATGTTCCTGATGCTCATCTGTGGGTTAAGAACTGTAAAGAGATGCTGCCCTCTACCTACAATCCCTTACGCTTTGACCAGCCAGTGCAAGCAACCCAGTGGCTGAAGGACTTCAAAATCACCAACGAACACTTTTTATCCAAGATAAAGACAACACGGCGATATGTTTGGACAAAGAGAGAGAGTACTGAAGAGGGCCGGACTTTAGGCGAGCTTATTGATCAGGGTGTGAACCGCATGAAGAGCAGCAGTGATGTGGTCGGTGCAGTGCTGCGAGAGCTGAGGCTTCAGGCAGGGGCTACCACAGAGGGCGAGGAGGTCTTTAAGTTGGCGGTGGCTGTGGATGGAGTAAATGCTCTTTGGGGCAACACAACTCTTAAAAAGGAAGACAGAACTATGTGTGAGCCAGAGGAACTGACCCTTATTCATAATTTAAGGAAGATGATGAAAACCGACTGGAGAGGAGGAGCCATTCTCACAGCCCTGTCTCAGACCGGCTCTCTGTTCAAGCCACGCTCTGCTTACCTTCCCAGCGAGCTGCTCGGAGAGGAAGGGTTTGATGAAATGGAACCTTTTGTGCCAGTTTGTGTGTCGGGTTACAACGAGAAGGAGTTTGAGAGCTGTTATCTGTACTATTTAGACCGCAACTGGCTGCAGCATCCACACAGTCGGTCTGAAGAAGGAAAGAAGGAGCTCATCTTTCTCAGCAATAGAAATCCATCCATCCTGGAAAGATTGTGTGCTTTCCTGTAGTGAACATCATCTGCTTTCTCTCACTTGCTTGTGTATATCATGTGAATCCAGTAAACATAAGTATGCAGCTTTTTCATAATAAAAAGGTTTGAAAAAAGCA
>TCONS_00019567
ATGGACAGACGGGCTCAGGGAAGTCCATTTCTCTGTGTCACACTCTGCATTACTGCTACACTCAGGGCTGGTTGATCCTGCATGTTCCTGATGCTCATCTGTGGGTTAAGAACTGTAAAGAGATGCTGCCCTCTACCTACAATCCCTTACGCTTTGACCAGCCAGTGCAAGCAACCCAGTGGCTGAAGGACTTCAAAATCACCAACGAACACTTTTTATCCAAGATAAAGACAACACGGCGATATGTTTGGACAAAGAGAGAGAGTACTGAAGAGGGCCGGACTTTAGGCGAGCTTATTGATCAGGGTGTGAACCGCATGAAGAGCAGCAGTGATGTGGTCGGTGCAGTGCTGCGAGAGCTGAGGCTTCAGGCAGGGGCTACCACAGAGGGCGAGGAGGTCTTTAAGTTGGCGGTGGCTGTGGATGGAGTAAATGCTCTTTGGGGCAACACAACTCTTAAAAAGGAAGACAGAACTATGGTATGGTCATGTACATttcacaggagggataataattttgtattattgGATATCCCATCTATAAAACCTAACTTTACGTAACAATTTTAGAATACTTATTATTATCTAGTCATTTGTATTGACCCTTtccacaagactgttatgattcGTGTAAGGGTCATGTGCATCTTAAATCTTCTAAGTCAGtgatttttcatcaagtaccacctcagagaaaaaattgtctctcaaAGTaacaccataatgaccagtattaaaatacagtagcgtaaCTACTGAccaaaaacgtcaacatttaaattaaaatgggcttttaaaagttaaaaatgataggttactgttcttaaaaa

Function

symbol description
dap3 Predicted to be a structural constituent of ribosome. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; gill; immature eye; liver; and nervous system. Orthologous to human DAP3 (death associated protein 3).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03011 Ribosome
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-051129-2 Predicted to be a structural constituent of ribosome. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; gill; immature eye; liver; and nervous system. Orthologous to human DAP3 (death associated protein 3).

Ensembl:

ensembl_id ENSDARG00000078500

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019566 False 1517 mRNA 0.48 13 14201401 14215617
TCONS_00019567 True 829 lncRNA 0.42 4 14209116 14212495

Neighbor

gene id symbol gene type direction distance location
XLOC_009782 NA coding upstream 42676 14153990 ~ 14158725 (+)
XLOC_009781 si:dkey-85k15.11 coding upstream 109556 14078748 ~ 14091845 (+)
XLOC_009780 rusc1 coding upstream 146092 14029283 ~ 14055309 (+)
XLOC_009779 zgc:162509 coding upstream 176305 13993285 ~ 14025096 (+)
XLOC_009778 zgc:162509 coding upstream 224466 13965923 ~ 13976935 (+)
XLOC_009784 gba coding downstream 964 14216581 ~ 14231312 (+)
XLOC_009785 polr3c coding downstream 33929 14249546 ~ 14280600 (+)
XLOC_009786 NA coding downstream 245645 14461262 ~ 14493478 (+)
XLOC_009787 NA coding downstream 259239 14474856 ~ 14481801 (+)
XLOC_009788 BX324006.1 coding downstream 263543 14479160 ~ 14484367 (+)
XLOC_009777 NA non-coding upstream 247254 13950017 ~ 13954147 (+)
XLOC_009776 NA non-coding upstream 255825 13942073 ~ 13945576 (+)
XLOC_009769 NA non-coding upstream 587213 13612654 ~ 13614188 (+)
XLOC_009768 NA non-coding upstream 699436 13499361 ~ 13501965 (+)
XLOC_009789 BX005402.1 non-coding downstream 263934 14479551 ~ 14508200 (+)
XLOC_009791 NA non-coding downstream 406907 14622524 ~ 14622765 (+)

Expression


Co-expression Network