XLOC_009787


Basic Information

Item Value
gene id XLOC_009787
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14474856 ~ 14481801 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021692
gtctgaagtaaaaattaaaaatatgcattcaCCAAACATAAAACTGTGCTTTGGCAATTTATCAAACAGCAGTGAAAATAGTGTTTGTGTTTGGCGAACAAACCTTGCCGCAAAAGCGCGTGTACGCATGCGCGTGAGAGTCGTTTGTTGGATCAGGTTTAAATTCCAGCGCAGCAATGGCAGAGCTCCTCCGAAACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATGGGCCATTGGAAAACCACACAGCTACAATGAAGATGGGAATCCTTGAAACAGTTAGCATCAGGAGCATGGTGAAGTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGAGGCTTTATCAATGCATCGTTTGTGCTTTTGGATTATAGTATCTACTCAACCTGGAATACAATGACTAAATAGGTTTacatggtaaatatttgaaacagaTGCAGCTTTATGTGCTTGAAGTTCctcttgaagattttttttttacttttcttgaaacttttgtgagtttttttttctgttctggaaTCATCTGTGTCAACTGGGTAAAGTAACCCATTGTTTAGATTTAATGGTGCTTTTGacgattttaatattcatttattaattttccttcagcttagtcccctgtttatcagggggagccacagcggaatgaaccgttcattgtttatatgcaaatatattagatgtttaatgttaatgaatgggtttaaccattaaaaatgtgatttcataAGTTCAGATTATCTTTTGTAGAATGGAAGTATTCAGGTGACAACACTAAACAATGGTTAAAGTAACCTCACAAAAATACTCacattttatgcagtttttttttttttttccgtttttacatttttgcagataTTTGGGATATATATTAAGTACACTTCAGCTctatgtattgaccttattcctcaCATACGAgcaggcacagccatttgaatcttaataaaaactgtttgttttgatgcttgatgttgcaaactgatattttcttaatatattattctgctttgtctgtagagtcataaacacactagtttgtagagcaagtattttgtctgttttccgctgtttaatattcctagtcatttctcccatagggcaCTGAATCAGATGTTCGAAAACAAATCGGAAAAACTTCCGCCTTAAAGAATGAGGTCAATATTAGGAGAAATAAAATGCTAGAATTTATACGGTATACTTTGTtgaaatgtgtaatgtatttgttattctaaagtacttttacaatagtgtctctttaataaaaataaataaataaataaataaatgtggc
>TCONS_00021693
gtctgaagtaaaaattaaaaatatgcattcaCCAAACATAAAACTGTGCTTTGGCAATTTATCAAACAGCAGTGAAAATAGTGTTTGTGTTTGGCGAACAAACCTTGCCGCAAAAGCGCGTGTACGCATGCGCGTGAGAGTCGTTTGTTGGATCAGGTTTAAATTCCAGCGCAGCAATGGCAGAGCTCCTCCGAAACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATGGGCCATTGGAAAACCACACAGCTACAATGAAGAATGGGAATCCTTGAAACAGTTAGCATCAGGAGCATGATGAAGTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGAGGCTTTATCAATGCATCGTTTGTGCTTTTGGATTATAGTATCTACTCAACCTGGAATACAATAACTAAATAGGTTTacatggtaaatatttgaaacagaTGCAGCTTTATGTGCTTGaagttcttctttttttttacttttcttgaaacttttgtgagtttttttctgttctgGAATCATCTGTGTCAACTGGGTAAAGTAACCCATTGTTTAGATTTGATGGTGCTTTTGacgattttaatattcatttattaattttccttcagcttagtcccctgtTTATCAGGGGgagccaaagcggaatgaaccgttcattgtttatatgcaaatatattagatgtttaatgttaatgaatgggtttaaccattaaaaatgtgaGTTCATAAGTTCAGATTATCTTTTGTAGAATGAAAGCATTCAGGTGACAACACTAAACAATGGTTAAAGTAACCTCACAAAAATACTCacattttatgcagttttttttttttttttccgtttttacatttttgcagataTTTGGGATATATATTAAGTACACTTCAGCTctatgtattgaccttattcctcaCATACGAgcaggcacagccatttgaatcttaataaaaactgtttgttttgatgcttgatgttgcaaactgatattttcttaatatattattctgctttgtctgtagagtcataaacacactagtttgtagagcaagtattttgtctgttttccgctgtttaatattcctagtcatttctcccatagggcaCTGAATCAGATGTTCGAAAACAAATCGGAAAAACTTCCGCCTTAAAGAATGAGGTCAATATTAGGAGAAATAAAATGCTAGAATTTATACGGTATACTTTGTtgaaatgtgtaatgtatttgttattctaaagtacttttaca

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0045088 regulation of innate immune response biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0031347 regulation of defense response biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005844 polysome cellular_component
GO:0042788 polysomal ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021692 False 1337 lncRNA 0.34 2 14474856 14477117
TCONS_00021693 True 1282 lncRNA 0.35 2 14474856 14481801

Neighbor

gene id symbol gene type direction distance location
XLOC_009785 polr3c coding upstream 194256 14249546 ~ 14280600 (+)
XLOC_009784 gba coding upstream 243544 14216581 ~ 14231312 (+)
XLOC_009783 dap3 coding upstream 259239 14201401 ~ 14215617 (+)
XLOC_009782 NA coding upstream 316131 14153990 ~ 14158725 (+)
XLOC_009781 si:dkey-85k15.11 coding upstream 383011 14078748 ~ 14091845 (+)
XLOC_009790 deptor coding downstream 106340 14588141 ~ 14675907 (+)
XLOC_009791 NA coding downstream 140723 14622524 ~ 14622765 (+)
XLOC_009792 NA coding downstream 156244 14638045 ~ 14638290 (+)
XLOC_009793 NA coding downstream 159198 14640999 ~ 14641398 (+)
XLOC_009794 col14a1a coding downstream 203115 14684916 ~ 15050842 (+)
XLOC_009777 NA non-coding upstream 520709 13950017 ~ 13954147 (+)
XLOC_009776 NA non-coding upstream 529280 13942073 ~ 13945576 (+)
XLOC_009769 NA non-coding upstream 860668 13612654 ~ 13614188 (+)
XLOC_009768 NA non-coding upstream 972891 13499361 ~ 13501965 (+)
XLOC_009795 NA non-coding downstream 416170 14897971 ~ 14898281 (+)
XLOC_009797 NA non-coding downstream 850061 15331862 ~ 15332147 (+)

Expression


Co-expression Network