XLOC_009789 (BX005402.1)


Basic Information

Item Value
gene id XLOC_009789
gene name BX005402.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14479551 ~ 14508200 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019572
agccccaaacgaaaaaaaaaaaaatccacaatatTAATTTTAGATGATGGTctgaagtaaaaattaaaaatattcattcaccAAACATAAAACTGCTTTGGCAATTTATCAAACAGCAGTGAAAATAGTGTTTGTGTTTGGCGAACAAACCTTGCCGCAAAAGCGCGTGTACGCATGCGCGTGAGAGTCGTTTGTTGGATCAGGTTTAAATTCCAGCGCAGCAATGGCAGAGCTCCTCCGAAACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATGGGCCATTGGAAAACCACACAGCTACAATGAAGATGGGAATCCTTGAAACAGTTAGCATCAGGAGCATGATGAAGTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGAGGCTTTATCAATGCATCGTTTGTGCTTTTGGATTATAGTATCTACTCAACCTGGAATACAATGACTAAATAGGTTTacatggtaaatatttgaaacagaTGCAGCTTTATGTGCTTGAAGTTCctcttgaagatttttttttcacttttcttgaaacttttgtgagtttttttctgttctgGAATCATCTGTGTCAACTGGGTAAAGTAACCCATTGTTTAGATTTGATGGTGCTTTTGacgattttaatattcatttattaattttccttcagcttagtcccctgtttatcagggggagccacagcggaatgaaccgttcattgtttatatgcaaatatattagatgtttaatgttaatgaatgggtttaactattaaaaatgtgatttcataAGTTCAGATTATCTTTTGTAGAATGAAAGCATTCAGGTGACAACACTAAACAATGGTTAAAGTAACCTCACAAAAATACTCacattttatgcagtttttttttttttttccgtttttacatttttgcagataTTTGGGATATATATTAAGTACACTTCAGCTctatgtattgaccttattcctcaCATACGAgcaggcacagccatttgaatcttaataaaaactgtttgttttgatgcttgatgttgcaaactgatattttcttaatatattattctgctttgtctgtagagtcataaacacactagtttgtagagcaagtattttgtctgttttccgctgtttaatattcctagtcatttctcccatagggcaCTGAATCAGATGTTCGAAAACAAATCGGAAAAACTTCCGCCTTAAAGAATGAGGTCAATATTAGGAGAAATAAAATGCTAGAATTTATACGGTATACTTTGTtgaaatgtgtaatgtatttgttattctaaagtacttttacaatagtgtctctttaataaaaataaataaataaataaataaatgtggc
>TCONS_00019573
caatattagattatataaaacaaaattacagagtaaataaaataattgtggacGCTGACAATTAAATACTGACTCAACAAATGAATTCACAATAATAAGccccaaacgaaaaaaaaaatccacaatattaattttagctgatggtctgaagtaaaaattaaaaatatgcattcaCCAAACATAAAACTGTGCTTTGGCAATTTATCAAACAGCAGTGAAAATAGTGTTTGTGTTTGGCGAACAAACCTTGCCGCAAAAGCGCGTGTACGCATGCGCGTGAGAGTCGTTTGTTGGATCAGGTTTAAATTCCAGCGCAGCAATGGCAGAGCTCCTCCGAAACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATGGGCCATTGGAAAACCACACAGCTACAATGAAGATGGGAATCCTTGAAACAGTTAGCATCAGGAGCATGATGAAGTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGAGGCTTTATCAATGCATCGTTTGTGCTTTTGGATTATAGTATCTACTCAACCTGGAATACAATGACTAAATAGGTTTacatggtaaatatttgaaacagaTGCAGCTTTATGTGCTTGAAGTTCctcttgaagatttttttttcacttttcttgaaacttttgtgagtttttttctgttctgGAATCATCTGTGTCAACTGGGTAAAGTAACCCATTGTTTAGATTTGATGGTGCTTTTGacgattttaatattcatttattaattttccttcagcttagtcccctgtttatcagggggagccacagcggaatgaaccgttcattgtttatatgcaaatatattagatgtttaatgttaatgaatgggtttaactattaaaaatgtgatttcataAGTTCAGATTATCTTTTGTAGAATGAAAGCATTCAGGTGACAACACTAAACAATGGTTAAAGTAACCTCACAAAAATACTCacattttatgcagtttttttttttttttccgtttttacatttttgcagataTTTGGGATATATATTAAGTACACTTCAGCTctatgtattgaccttattcctcaCATACGAgcaggcacagccatttgaatcttaataaaaactgtttgttttgatgcttgatgttgcaaactgatattttcttaatatattattctgctttgtctgtagagtcataaacacactagtttgtagagcaagtattttgtctgttttccgctgtttaatattcctagtcatttctcccatagggcaCTGAATCAGATGTTCGAAAACAAATCGGAAAAACTTCCGCCTTAAAGAATGAGGTCAATATTAGGAGAAATAAAATGCTAGAATTTATACGGTATACTTTGTtgaaatgtgtaatgtatttgttattctaaagtacttttacaatagtgtctctttaataaaaataaataaataaataaataaatgtggc

Function

GO:

id name namespace
GO:0035239 tube morphogenesis biological_process
GO:0035295 tube development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0009790 embryo development biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117529

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019572 False 1382 lncRNA 0.34 2 14479551 14508200
TCONS_00019573 True 1478 lncRNA 0.33 2 14505804 14508200

Neighbor

gene id symbol gene type direction distance location
XLOC_009785 polr3c coding upstream 198951 14249546 ~ 14280600 (+)
XLOC_009784 gba coding upstream 248239 14216581 ~ 14231312 (+)
XLOC_009783 dap3 coding upstream 263934 14201401 ~ 14215617 (+)
XLOC_009782 NA coding upstream 320826 14153990 ~ 14158725 (+)
XLOC_009781 si:dkey-85k15.11 coding upstream 387706 14078748 ~ 14091845 (+)
XLOC_009790 deptor coding downstream 79941 14588141 ~ 14675907 (+)
XLOC_009791 NA coding downstream 114324 14622524 ~ 14622765 (+)
XLOC_009792 NA coding downstream 129845 14638045 ~ 14638290 (+)
XLOC_009793 NA coding downstream 132799 14640999 ~ 14641398 (+)
XLOC_009794 col14a1a coding downstream 176716 14684916 ~ 15050842 (+)
XLOC_009777 NA non-coding upstream 525404 13950017 ~ 13954147 (+)
XLOC_009776 NA non-coding upstream 533975 13942073 ~ 13945576 (+)
XLOC_009769 NA non-coding upstream 865363 13612654 ~ 13614188 (+)
XLOC_009768 NA non-coding upstream 977586 13499361 ~ 13501965 (+)
XLOC_009795 NA non-coding downstream 389771 14897971 ~ 14898281 (+)
XLOC_009797 NA non-coding downstream 823662 15331862 ~ 15332147 (+)

Expression


Co-expression Network