CI01000053_00647818_00652652


Basic Information

Item Value
gene id CI01000053_00647818_00652652
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 647708 ~ 652719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_00647818_00652652.mRNA
AAATGCAGTGTATTTAGTATTCAGAAGTCTTTTGTTAATGTAGTTCTGTGCTATCTTCAAGGTTAAAATGGCGAAAAGAAGAAATGTCTCTAAAATAGTGGTGACATGCGAGTGGGCATCGTGCACTTTCAAGAGTCAAAGCATGGAGGAGTTAAGTGATCATATGTCTCTACATTTGAAGGAGCATCTTGGGGAAGGAGATGCCATGGAGGAACTGGAGGATTATCCATGCCTATGGAGGGGCTGTCAGTTCCTGGCGATGGGAAGCCAAAGTGAGCTCGTCGCTCATGCCCATTTCCACATCTTCCACAGCAAGCTGAAATGCATCGGGACTCAGCTTCTTGAATCCCACCCCGAACTGGCTAGTTGCACTCAAGATCTCCATAGCAGCAGTCTACTCCCAGATGTCTCTGAGGGATTTGTCTGTCAGTGGCAGCACTGTGATAGTTCATTTAATAATCCGGAATGGTTCTACCGTCATGTTGACATGCATGCGCACTGCACTGAGCTCCAGCCACTTCCTGATCGACAGCAGGCTCTCTTCTGCAGCTGGTCAGGCTGTGATGCTTTCTTTAAAATCAAGTACCGTCTGCGGGAACATCTGCGCAGTCATACACAGGAGCGGCTGGTCGCTTGCCCTACCTGTGGCTGTATGTTCTCCAGCAATACCAAGTTCTTTGACCATATTCAGAGGCAAGCAGAACCGGAAGATTCTCTCACATGTGGACATTGTGACAAAGCATTTGCCAACGAGAGGCTGCTGAGAGACCATGTTCGTCAGCATGTGAATCATATAAAATGTCCTCTCTGTGACATGACATGCACGTCCCTCTCTACTTTGAAGATCCATATCAAGTTTCGTCACTGCGATGAGAGGCCCTTCCCATGCGACTTCTGTGAGAGCAGCTTCAAGAACCAACATGATCTGCGGAGACACATGGAAACACACAACGAGGGAGCAGCGTACCACTGCACAGTAGAGGGCTGTGGATACTCCTCACGCATGGCCCACACCATGAACCAGCACTATAAACGAGTGCATGAGCAGGACAACATGGTTCCGAGGTATAAGTGTCACCTTTGCGACAAGACTTTCTCTTGGTGTTACACTCTCACTCTCCACCTTCGAAAGAAGCATCAACTCAAATGGCCATCTGGACACTCTCGTTTTAGGTATAAGAAGGATGAGGATGGGTATCTGCGGCTTAACATGGTGCGCTTTGAGACTGTAGAGGTTACGGAAGAGTTGATCAAGAACATGGCTGAAAAGCGCACCCCTCGCAAGGTCTCTGGTTCAACCGGCCACTCCAAGGAGCCCATGATGCATCCCGATAGTGGCAACAGCACTCCCCAAAACTCTTCATCGCCCTCTTCTCCTTCCTCATCTTCTTCCACCTCAGAGCTCTTGGAGGGGGCTGACAGCAGTGCATTAAAAGGCGATGAAACATCTGTGTATTGTGTGTTGAACACTGTGACTGAGGTGATTGGGGAGCCAGAGGAAGTGACCCAGCCTGGTGAGCCATCAGGGGCTGTTAGAGCTCTGGCTGCAGTGGCTAGAGGTCTCGGAATGGACGTTGTGTAGTCTCATACTTATCAAATGCGGTTTCACAGTGCAGATGCACTGTTTCATCAGATAACCTGTGTAAGAATACACAACCTGTTTGACCTCCATTAGATCAATGTTTTTATAAA

Function

NR:

description
MBD2-interacting zinc finger protein

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_00647818_00652652.mRNA True 1692 mRNA 0.48 9 647708 652719

Neighbor

gene id symbol gene type direction distance location
CI01000053_00629840_00639156 NA coding downstream 8537 629713 ~ 639171 (-)
CI01000053_00496924_00507195 NA coding downstream 140513 496723 ~ 507195 (-)
CI01000053_00454429_00457235 NA coding downstream 190473 454412 ~ 457235 (-)
CI01000053_00432322_00449797 NA coding downstream 197911 432269 ~ 449797 (-)
CI01000053_00390989_00410148 SUPT5H coding downstream 237560 390799 ~ 410148 (-)
CI01000053_00656235_00664346 MAP6B coding upstream 2732 655451 ~ 664346 (-)
CI01000053_00667421_00672829 THAP12, PRKRIRB coding upstream 14356 667075 ~ 674421 (-)
CI01000053_00678066_00685960 DYRK1A coding upstream 25213 677932 ~ 687806 (-)
CI01000053_00696659_00703507 NA coding upstream 43643 696362 ~ 703507 (-)
CI01000053_00733357_00737206 NA coding upstream 80596 733315 ~ 737327 (-)
G225622 NA non-coding downstream 76451 571056 ~ 571257 (-)
G225620 NA non-coding downstream 91649 552476 ~ 556059 (-)
G225570 NA non-coding downstream 120178 526117 ~ 527530 (-)
G225571 NA non-coding downstream 121763 524494 ~ 525945 (-)
G225606 NA non-coding downstream 154419 493053 ~ 493289 (-)
G225665 NA non-coding upstream 94662 747381 ~ 747619 (-)
G225668 NA non-coding upstream 96532 749251 ~ 749495 (-)
G225563 NA non-coding upstream 155448 808167 ~ 809734 (-)
G225561 NA non-coding upstream 160909 813628 ~ 814240 (-)
G225678 NA non-coding upstream 163685 816404 ~ 816668 (-)
G225574 NA other downstream 100840 543647 ~ 546868 (-)
G225812 NA other upstream 806876 1459595 ~ 1466732 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other upstream 1564729 2225210 ~ 2226481 (-)
G226826 NA other upstream 1913173 2565892 ~ 2567072 (-)
G226963 NA other upstream 2343998 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 2897614 3550333 ~ 3552847 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008443 zgc:112083 coding NC_007126.7 CM002899.2 19990068 ~ 20003872 (+)
bowfin (Amia calva) AMCG00016247 zgc:112083,LOC108278169,LOC107726099,LOC107662779 coding CM030122.1 CM030122.1 13535694 ~ 13542635 (-)