CI01000053_00656235_00664346 (MAP6B)


Basic Information

Item Value
gene id CI01000053_00656235_00664346
gene name MAP6B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 655451 ~ 664346 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_00656235_00664346.mRNA
ATTCAAGCCTTCGCCTCGTCGTTATCGATCATGGCATGGCCCTGTATAACCAGGGCTTGCTGCATCAACCGCTTCTGGAGTGAGTTGGACAAAGGTGACATTGCAGTGCCTTTGGTTTTCACGAAGTATTCAGACGTGGCCGAGGTGCAACATCTGCACCCTCAACCCAAACCAATAATATCACAGAAGCCGGTCACCACAGAAGCTCAACCTGCCCATAGCGCTCAGCAGGAGGCGTTGGCCAGAGCGACTCACGGCGCTGCTGATGCCGCAGCATCATCAACTCAAGATGGGTCAGGCGCTTCTGTGATGCGCGAGGATTTCAAAGCCTGGAGTGTGCGTCCGGAACGAAGCTGCAAACCCAGAAACGAGTATCAGCCATCAAAGACCCCTTTCAACAACGTGACTCAGTACCAGAAAGATTATAAACCGTGGCCAATTCCGAAAAAAGGAGATCATCCGTGGATTCCCAAACCCACTCCTGCTGCACCCTGTAAGGCCGAGGGCAAGTTCTCCAAACAGGAGCAGGCCACTACTGAGGTTGAAACCGGTGTGGAAAAATGTGAGATTGAGGAAAAGCAGCATGAAAAAGATAGTAAAGAAAGGAGAAAGAAGTTAGACAAAAAAGAGCACGTGTCAGAGGGGATCAAAATGGAGCAAAATGTTACAGCGGAGGGAAAGAGGAGGTCAGCTGCAGATGCTCTCAACAGGCAGATTAAGCAGGAAGTCACATCTGGAAGCTCATATAGGACGGAGTTCAAGGCTTACACAGATGTCAAACCAGTGAAACTCATCAAAGCGAAATCTCAGTACAAACTCCTAGTGGAGGAAAAAACCAACCTGGAGACCAGTTACAGCGCCACCTTTAAAGGAGAGCAGGCCAAACCTCAGGCCACAGACAACAAGCTGATGGACCGCCGTCGGATACGAAGCCTGTACAGTGAACCAAGCAAAGAGTCCAGCAAGGTGGAGAGGCATCATTTATCACTTTCCAAGCCAAAAAAGACAACAAGCCATAGCAAAACAATGAAAAAAGCAAAGGAGAAGCCAATCGCTGGGAGTCAAGCTGCCAAGAAGAAAACCTCAGTGAGCAACCAGGAGCCAAAGCCAGAGGGAGGGGTCACCAAGAAAAGCAAAGAAATGATCAACAGACTAGCCGAGGCAAAAGATTAAGTGCACTTTTGTGTTTGGGGGGTTGAGGAGGCTATAATATGGAATAGAGGACTCTCATCCCCATGTTCATGACTTTACTCTAATGGCCCGACTCTGATGGTGTCTCTACCTACGTATTGTAGTGGATCAAGGCTTGTCTGCTTGATTTGTCTTGACTGTGCGGCCACTGTCCCGTCTATTATGAATCTATCTTTGCTTTTGCCCCGCATCCCTTTCCATATACATCAATAGCTTTCTCTGTGGCAAAGATGATTCACGGATCCTTGTTGCATGCTGCCTCTGAGCAAATGGCCATAAGCCTTATTATATAAGATAAGGTTTTTGCTTTATCTTGCATTGAAAGATATTTACTGGTTGTTTCTTTCAAGCAAACTCATTTAATGTGATATGAACTTCATTTGAAGAAGTATATGGACCACTCTAATTAGATGCACCAATAGCATTGCTCAAACACATAATATTTTTCACGACACATTCAGATTATAGCAATATTATATTCCTCACTTACAATCTACAATGAACACAAGAATGTCTAAACATCTCAAATCGCATGTTTAAAGATTGTGTGACACTGGAAATTAGCAGTTAGGAGCTTCACGAGTCAACAAGCGCACCATGTTTAGCAAATGAACACGATCCAGAATCAAAATAAGTATTTCAGTTCTTTCAACAACAGTGCCAGTCAGCAGGCATTGTTTCTCTTAAAGTGTGATTGTTACCTTGTAGTGTAAAGCATTATGCTATGGAAACATGCTTACGCTTAGCTTGCTCTGCTCTCAATAAA

Function

symbol description
map6b Predicted to enable microtubule binding activity. Predicted to be involved in cytoskeleton-dependent intracellular transport and regulation of microtubule cytoskeleton organization. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm. Predicted to be active in Golgi-associated vesicle; cis-Golgi network; and microtubule. Orthologous to human MAP6 (microtubule associated protein 6).

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10432 MAP6; microtubule-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_00656235_00664346.mRNA True 1957 mRNA 0.45 3 655451 664346

Neighbor

gene id symbol gene type direction distance location
CI01000053_00647818_00652652 NA coding downstream 2732 647708 ~ 652719 (-)
CI01000053_00629840_00639156 NA coding downstream 16280 629713 ~ 639171 (-)
CI01000053_00496924_00507195 NA coding downstream 148256 496723 ~ 507195 (-)
CI01000053_00454429_00457235 NA coding downstream 198216 454412 ~ 457235 (-)
CI01000053_00432322_00449797 NA coding downstream 205654 432269 ~ 449797 (-)
CI01000053_00667421_00672829 THAP12, PRKRIRB coding upstream 2729 667075 ~ 674421 (-)
CI01000053_00678066_00685960 DYRK1A coding upstream 13586 677932 ~ 687806 (-)
CI01000053_00696659_00703507 NA coding upstream 32016 696362 ~ 703507 (-)
CI01000053_00733357_00737206 NA coding upstream 68969 733315 ~ 737327 (-)
CI01000053_00739813_00746803 NA coding upstream 75316 739662 ~ 747031 (-)
G225622 NA non-coding downstream 84194 571056 ~ 571257 (-)
G225620 NA non-coding downstream 99392 552476 ~ 556059 (-)
G225570 NA non-coding downstream 127921 526117 ~ 527530 (-)
G225571 NA non-coding downstream 129506 524494 ~ 525945 (-)
G225606 NA non-coding downstream 162162 493053 ~ 493289 (-)
G225665 NA non-coding upstream 83035 747381 ~ 747619 (-)
G225668 NA non-coding upstream 84905 749251 ~ 749495 (-)
G225563 NA non-coding upstream 143821 808167 ~ 809734 (-)
G225561 NA non-coding upstream 149282 813628 ~ 814240 (-)
G225678 NA non-coding upstream 152058 816404 ~ 816668 (-)
G225574 NA other downstream 108583 543647 ~ 546868 (-)
G225812 NA other upstream 795249 1459595 ~ 1466732 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other upstream 1553102 2225210 ~ 2226481 (-)
G226826 NA other upstream 1901546 2565892 ~ 2567072 (-)
G226963 NA other upstream 2332371 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 2885987 3550333 ~ 3552847 (-)

Expression


Co-expression Network