CI01000053_00667421_00672829 (THAP12, PRKRIRB)


Basic Information

Item Value
gene id CI01000053_00667421_00672829
gene name THAP12, PRKRIRB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 667075 ~ 674421 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_00667421_00672829.mRNA
AGAGTTTAATTGCGAAAAATATATATTTAATATGCAAGCAATGAGCAGTGTTTATTCTGTATTTCAACTCCATTGCAGAGATCCTGTTTTGTAGTCTGTATAACACGGTAAAATGTGATTTTATGATAATATATTTTAGCGTCTCTACGCGTGACATTTAGCTGTTTCAATGGCCTATTTATCGAAGAGATTATTAGTGATTAGAATCCGGAATCGGTTCTTTTGAACAATTCGCTTCAAAGAATCGGTTCAGATTCTGTGATTCTTTACGTCATGACGTAGTTACGAAACCTCACGGTCCATTCCGGCATATTTAAAGAGTAATTTGACAACTCATTTTAAATAATACTGGAGTCTTCAGAATTGAGGTATTCAAACGATGTGTTAAATATAAATCCTACAGCACTGTGGTTTTAGAGACTACTGATTTACATTTAGGGTTCGGGGTAGGTTTAGTAGCCTAGCTACCTCTAAAGATTGTATAAATGAATAATAGATAATGTGTAATCATTGTAGCTATATCAACATTGTTCTCGATTGTCACTGAATGTGAGAGGCTGCTCACTGCAGAGCCAATGGGTGGAGCTTGACGTCCAGCTCCCTCAGAGCCGTTGAAAAACATTTAACGGCTCTGAGCTCCCACCCCCTGGTCGTTAGAGGTGGAGCTTTGCGGTCGAGCCACACCCTTACCCTATCCATAACCCTATCCCTAAACTTAATTTAAGTCAAGCTCCACCCATTACATCCCATGGAGCTGAAAGTCATTTGGCTCTGCAGTGAGAAAGAGGAGCTTTTAATTAAAAATACCCGGTCTTTGCTGCCATCTACAGGATTCACGACTTTAATGAGCGCGAAGGGAGAGGATCCTGTCACAAGATCTGAACAAGTATTGATAATGAAGCTATGGAGACCGAAAAACTATTATTTCAAATCCAAGTATTTATTTATTTAGATATGAGGCTGCGTAAAAGCTGCATGAAGATTATTCAATATAGTGTTCCGATTTGCTTTAAACTACAACAATAAACAAATGAACTAAATTGAACTAAATAATGAGACTGTATTTATTATCTGTAAGATGAGTTTTATAAACTGTTAAAAATGTAGAAAGATTAACCTTAGAATTGTGTATTGTTGTTGTTATTTTATTTTATTACATTTTTGAGGTAAAATATAAATAGTAAAAAGTAGACAAAAAGAAAATGTAAAAGCACAGACCCTACCAAATCTAACATCCGCGATTAAAAAAAAATATAAAAATGCACATAGCATAGTTGGCCTGAATTCAACCAATGAGATAAGAGCTTTTGACTCGAGAACCGTTTGGAACGATTCAGGCCGCTTTTGTGAATCGGTTCAAAAGATTCATTAAACGATCTGACTCAAAAGATCGATTCGTAAATCGCTCTTGCTTTCAGTATGGCTGGTGCATTGTGGGATCGAAACGAATTGCATTGTGGGTTGGCACGCCAACAATACTAGTGCTTCATACTTGCGCGCCTTGTTTATTTCTGTAATGTTGCAATGATTATATTAATTACATCATAAATAATAAGAGTGTAGAAAGGTTTTTGTCAGACATTCAATGCACAATGCCAAATTTTTGTGCCGCTCCGAACTGTACCAGGAAAAGCACTCAGTCCGATTTAGCTTTCTTTAGGTTTCCAAGGGATCCGGAGAGATGTAGGTTGTGGGTGGAGAACTGTCGGCGTGCAGATCTGGAGGAGAAAACTCCTGATCAGCTGAACAAGCACTACCGGCTGTGTGCAAAGCACTTTGAACCAGCCATGATATGCAAAACTAGCCCTTACAGGACAGTACTAAGGGACACTGCTATTCCCACGATTTTTGATTTAACCAGCCACCTCGCAAATCCTCACAGCAGACATCGCAAACGCATCAAAGTTCTGACAGATGAAGAGGTTCGGAAAATCAAAGAAAGACGATTGGAGTCTTCGATTGAACAACTGCTCTCGAAAAAAGACTGTGACTCTCAGGATGACAGCGAGAACACAGATGACGTCCCTCAGCTTACGCCCGAACAAAAAGACCTAAGAGAGTTCTTAAGATCTTCGTTTGAAGTCATGGTTTTGATAGGAAGGCAAAACTTTCCATTCAGTTGCAATGCAAGAGAAGATGAGATCCGCTCTAAGGAGGAGGAACGCCTCTTTAGCACAGGTACCTTTCAAGCGCTGATTGAGAACCGTATCAATGCGGGCGATGAATTTCTTCGAAGGAGGTTCGAGGCAGTGGCTGTTAATGAGGACTATTGCCCGGCCGTTCAGCAGAGGCAGATGCTGGAGGTCTGCGAGAGATGCGTGCGTGAAGAGATCCTTCAACAAGTCCGAGAATGTCGCTTCTTTTCGATCATCACAGGGGAGTTAGTGGACTTCCCAGAGGGAGAACACCTGCCTGTATTCCTGCGCTTTGTAGACCAAGCCAACACTCTTAGAGAAGAGTTCATAGAGTTCCTCTCATTTGAAGGAGAGGAGGTTGCTGTCGCTGAGAGATTGGAGTCTCAGTTGACGAAGGGATGGGGCCTGAGTATGGAACACTGCAGAGGACAAGCGTATGCGGGATCTGGTATACTTGGGACTAAGATGAAGGTCATCGCTGCCCACCTCAAGGAGAAATATCCCATGGCGGTGATCACGCCCACTTCCACCTGTGCACTTAATGTTCATCTCGCTAATGGCATGCCGCTGACTGGAGTGCAAGTTGTGATATCAGTTCTGAAAAAGACAAATGTGTTTTTTAAAACATCTCCATTGTTGCAGACCGAACTCGATAATGCTATCTCCATTCTGTGTCAAGGAAACATGGAAAAAGAAAATGCTCTCAAAGAGGGCTCGCGTTCAACCTGGACCGATCTTCATAATGTGTTCGAGATGGCTGTCGATTTGATGGAGCCACTTCTGCTGTGCATGGACAGCATACATGACAATGAGGATCTGAAGTGGAACGACCAAGTCACCAATGATGCTTACGCCATTTCAGAGGCCTTGGCGGACTTTGAGTTCATCGTGACGTTGGTTATTTTGAAGAACGCCCTGTCTTTCACGAGGGCTTTTGGTAAGAACTTACAAGGAGAAACCATTGATGTGTTTTTTGCTGCCAACAGCCTAACAGCAGTACTGCATTCATTGCACGAGGTAACGGACAATCTGGAAGTATACCACGAATTCTGGTTCGAAGAGGCTGTTAGTTTGGCGACTGCAATGGAGATCCCGGTCAAAGTCCCGAGGTTGTTTCTTCGGAAGCAACAGGCAGTGGAGACCATGGAAATACAGGCGGAGTCGTTCTTTAAAGAGTATCTGACGCAGCCGGTTATGGAGTACATCACACAAGAGGTCAAGGACATCTTCTCGGAGAATCATCTCAAGGCGCTCAAGTGCTTGTCTCTTGTCCCCGCAGTCATGGGCCAAATGAGGTTCAATACCTCTGAGGAGTCACATGCAGACATTTACAGGAGCGATCTGCCGCATCCGGACACATTGCCGGCTGAACTGCATTGTTGGAGAATAAAATGGAAACACAGAGGAAAGGAAGTAAGCTTGCCGTGCACCATTCACGAAACCCTTCAGCACTCCGATGTGAAGTTCTTCCCAAATGTTAATGCGTTTTTGAAAATATTAGCCACGTTGCCGGTGCTGAAGCTTGATGGGAGTCACGGTGAAACTGCCCAAAGACGGTTACAAGCTTACCTCACAGACACTGCGGTAAACCAAAGGTGTAAGAATCTAGCTGTGCTGAACATCAATTACCATATAAAGACAGACCTGGAAGAAATGGTTCAGTGTTATATAAAAAGTTACCCAGAAGAAAGTGAGAGTGATTAACCACTAAAACATATAGACTCTCCAAGTATCGACTGCAAAAATATTTGAGCTGGAAATGTAATAAGTTCTGTACTGTTTTGTAAGTTCCCTTTGCTTTTTGTCATGATGCCAATTGTTTATTTTGTGTCTTCCCCCCCCCCCCCTGGAGATATATAGTACTATTTTTACATTTGTGAGGACCGTCAAAAAGATTCACCATGTACGATTTTACACAGTGGTCTTGCATTGTTTTGTTTGCTTGACTGTCTAGTGTGAAGCTGGACTGATAAAAGACAAAATTGACATTGAAATTCAACTATTAAAGACAAGTTTGTGTTTGTATAAACTGGTCCAAAGTGTAAATAAA

Function

symbol description
thap12 Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be involved in negative regulation of cell population proliferation and signal transduction. Predicted to be located in nucleus.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_00667421_00672829.mRNA True 4185 mRNA 0.42 5 667075 674421

Neighbor

gene id symbol gene type direction distance location
CI01000053_00656235_00664346 MAP6B coding downstream 2729 655451 ~ 664346 (-)
CI01000053_00647818_00652652 NA coding downstream 14356 647708 ~ 652719 (-)
CI01000053_00629840_00639156 NA coding downstream 27904 629713 ~ 639171 (-)
CI01000053_00496924_00507195 NA coding downstream 159880 496723 ~ 507195 (-)
CI01000053_00454429_00457235 NA coding downstream 209840 454412 ~ 457235 (-)
CI01000053_00678066_00685960 DYRK1A coding upstream 3511 677932 ~ 687806 (-)
CI01000053_00696659_00703507 NA coding upstream 21941 696362 ~ 703507 (-)
CI01000053_00733357_00737206 NA coding upstream 58894 733315 ~ 737327 (-)
CI01000053_00739813_00746803 NA coding upstream 65241 739662 ~ 747031 (-)
CI01000053_00797990_00802827 NA coding upstream 123286 797707 ~ 803060 (-)
G225622 NA non-coding downstream 95818 571056 ~ 571257 (-)
G225620 NA non-coding downstream 111016 552476 ~ 556059 (-)
G225570 NA non-coding downstream 139545 526117 ~ 527530 (-)
G225571 NA non-coding downstream 141130 524494 ~ 525945 (-)
G225606 NA non-coding downstream 173786 493053 ~ 493289 (-)
G225665 NA non-coding upstream 72960 747381 ~ 747619 (-)
G225668 NA non-coding upstream 74830 749251 ~ 749495 (-)
G225563 NA non-coding upstream 133746 808167 ~ 809734 (-)
G225561 NA non-coding upstream 139207 813628 ~ 814240 (-)
G225678 NA non-coding upstream 141983 816404 ~ 816668 (-)
G225574 NA other downstream 120207 543647 ~ 546868 (-)
G225812 NA other upstream 785174 1459595 ~ 1466732 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other upstream 1543027 2225210 ~ 2226481 (-)
G226826 NA other upstream 1891471 2565892 ~ 2567072 (-)
G226963 NA other upstream 2322296 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 2875912 3550333 ~ 3552847 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008441 thap12b coding NC_007126.7 CM002899.2 19900197 ~ 19908909 (+)