CI01000053_00797990_00802827


Basic Information

Item Value
gene id CI01000053_00797990_00802827
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 797707 ~ 803060 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_00797990_00802827.mRNA
AGAACGGAAGGTGAAGTTACTTGTCAAGAGTTTGTGCATCCAAAAGGTAACATCTCATTTTTATTCTTTAAAATGTTTTAACAGTGACACTTTTATTTAACACTTTTTATTATTAAAAAGACTAAATTTTGTCTTCAAATATATTCATTTTAGATTAAAAATATCTGAAAGAAGTATTTGCTTCTTTAGTTTGCATATTTTCTAATGGTTTGTCTTCTTTAGTTTGCCTCAGGATGATCAAGCTGCTCCAGTTATTGTGTCTTGCTGGCGTCCTTCTACAGTGTGAAGGTCAAGGTCTCCAAACATGCCTTGTTCACCCTACGTACAGACCGGCAGAAAACGCCGATATAACAGTGACGTGTGGAACCGATCAGATGTTTTTAAAAGTTCTCCTGTGTCCAATGTATTTTGGGGGATACAACGAATCTCTAATGGCCCTCAATGCTAAGTTTAACATCCCAGCCTGCCGTGGAGTAGCAGACTGGACCGTCAATCCTCCCGTCTTGCTGTTTAACTTCTCAATCTCTCAGGAGGTGCTCACTCTTTGTGGCAACAATATGAACATTACAAGTCAAGTGGGCTCAGGAGTATTCTCAGAGTTCTCCCAAATCCAGTCCGTTAATGTCTCCGGATTAATCAATTCCTGGGATCCCAGCATTAGCACAATCACTTACAGGCAACAACTGATGTACCAGTTTTCATGTCTGTATCCACTACAGTATTTAGTCAACAACACCGAGCTCAGCGTGTCAGGAGTGAGTCTAGCTGTGAAGGACAACAATGGCACCTTCATCAGTACTCTAAGCATGGGTCTTTTCAGTACTGTCGACTATAGTACCAAATTACAGATACCAGGATCTGGGCTGCAGTTGAAAACTCGCATATATGTAAAGGTCAAGGCAACAAATCTCACAAACAAGTTCAATGTGTTGCTGGATCGTTGCTATGCCACAACCAGCCCATATCCAGTCAGCAGCACCTCCTATGATCTTTTTGTTGGGTGTACTCGTGATGCCCAGACAAAGATCGACACGAATGGGATATCCCAGGAAGCTCACTTCTCCTTTGAGGCTTTCCGCTTTGTGGAACATAAGAATCTGACCATCTCCACTTTCTACCTGCATTGTGTTACCCGCCTCTGTGAGAACTCCACTTGTGCCACCTTGCTTCCGAAATGTGTAAGGAAGAGAGAAGTCAAATCTCCAGAGTACAACGCCAGTGATGTAACCACTGTCTCCTCAGGACCAATCATGACCAGAGTTGACAACGCCAACGATACCTCTTCAGCATCCATCCCTCAACTGACGTATGCTGGCATAGCCACTGGCTTGCTGAGCTTCTTTCTATTGGACTGGTTGTCTACATCAGGACTTGCATGATCTACATCAGGATTACCTTACCTCTTGATTGAACACAACAGTCTTAGAAGATTTCTCACATGATACAAAAATGTGAGAAAATATATGTGTCAGTTATCAACACCTCTGTTTTACAAAATTAGTAGATAGAATATTTTGTAATTTTGATCTTTTTTGTCCTATATGTTCTATGATCTTCTATGAAAACAAGGAAAATAGAAAAGTCTATAATGCATGTAATACTGCTCTTGGGGAAAATATATGCACTATGTATGTAATAATTTAACATTTAAACTTGAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_00797990_00802827.mRNA True 1662 mRNA 0.40 9 797707 803060

Neighbor

gene id symbol gene type direction distance location
CI01000053_00739813_00746803 NA coding downstream 50676 739662 ~ 747031 (-)
CI01000053_00733357_00737206 NA coding downstream 60380 733315 ~ 737327 (-)
CI01000053_00696659_00703507 NA coding downstream 94200 696362 ~ 703507 (-)
CI01000053_00678066_00685960 DYRK1A coding downstream 109901 677932 ~ 687806 (-)
CI01000053_00667421_00672829 THAP12, PRKRIRB coding downstream 123286 667075 ~ 674421 (-)
CI01000053_00815725_00817893 LIM2.1, LIM2.3 coding upstream 12537 815597 ~ 817893 (-)
CI01000053_00830433_00864331 NA coding upstream 27138 830198 ~ 864373 (-)
CI01000053_00865420_00881846 ROBO3, ROBO2 coding upstream 62313 865373 ~ 881846 (-)
CI01000053_00956174_00961278 ACAD8 coding upstream 152949 956009 ~ 961278 (-)
CI01000053_00968102_00970741 VPS26BL, V26BL, V26BB, VPS26B coding upstream 164983 968043 ~ 971775 (-)
G225668 NA non-coding downstream 48212 749251 ~ 749495 (-)
G225665 NA non-coding downstream 50088 747381 ~ 747619 (-)
G225622 NA non-coding downstream 226450 571056 ~ 571257 (-)
G225620 NA non-coding downstream 241648 552476 ~ 556059 (-)
G225570 NA non-coding downstream 270177 526117 ~ 527530 (-)
G225563 NA non-coding upstream 5107 808167 ~ 809734 (-)
G225561 NA non-coding upstream 10568 813628 ~ 814240 (-)
G225678 NA non-coding upstream 13344 816404 ~ 816668 (-)
G225687 NA non-coding upstream 103500 906560 ~ 907001 (-)
G225690 NA non-coding upstream 135525 938585 ~ 938904 (-)
G225574 NA other downstream 250839 543647 ~ 546868 (-)
G225812 NA other upstream 656535 1459595 ~ 1466732 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other upstream 1414388 2225210 ~ 2226481 (-)
G226826 NA other upstream 1762832 2565892 ~ 2567072 (-)
G226963 NA other upstream 2193657 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 2747273 3550333 ~ 3552847 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008434 si:dkey-4p15.5 coding NC_007126.7 CM002899.2 19681718 ~ 19688389 (+)