Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000053_00815725_00817893 |
| gene name | LIM2.1, LIM2.3 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 815597 ~ 817893 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| lim2.3 | Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2). |
| lim2.1 | Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2). |
| description |
|---|
| lens membrane protein mp19-1 |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000053_00815725_00817893.mRNA | True | 654 | mRNA | 0.46 | 4 | 815597 | 817893 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000053_00797990_00802827 | NA | coding | downstream | 12537 | 797707 ~ 803060 (-) |
| CI01000053_00739813_00746803 | NA | coding | downstream | 68566 | 739662 ~ 747031 (-) |
| CI01000053_00733357_00737206 | NA | coding | downstream | 78270 | 733315 ~ 737327 (-) |
| CI01000053_00696659_00703507 | NA | coding | downstream | 112090 | 696362 ~ 703507 (-) |
| CI01000053_00678066_00685960 | DYRK1A | coding | downstream | 127791 | 677932 ~ 687806 (-) |
| CI01000053_00830433_00864331 | NA | coding | upstream | 12305 | 830198 ~ 864373 (-) |
| CI01000053_00865420_00881846 | ROBO3, ROBO2 | coding | upstream | 47480 | 865373 ~ 881846 (-) |
| CI01000053_00956174_00961278 | ACAD8 | coding | upstream | 138116 | 956009 ~ 961278 (-) |
| CI01000053_00968102_00970741 | VPS26BL, V26BL, V26BB, VPS26B | coding | upstream | 150150 | 968043 ~ 971775 (-) |
| CI01000053_00974193_00978185 | JAM3A | coding | upstream | 155368 | 973261 ~ 978185 (-) |
| G225561 | NA | non-coding | downstream | 1357 | 813628 ~ 814240 (-) |
| G225563 | NA | non-coding | downstream | 5863 | 808167 ~ 809734 (-) |
| G225668 | NA | non-coding | downstream | 66102 | 749251 ~ 749495 (-) |
| G225665 | NA | non-coding | downstream | 67978 | 747381 ~ 747619 (-) |
| G225622 | NA | non-coding | downstream | 244340 | 571056 ~ 571257 (-) |
| G225687 | NA | non-coding | upstream | 88667 | 906560 ~ 907001 (-) |
| G225690 | NA | non-coding | upstream | 120692 | 938585 ~ 938904 (-) |
| G225691 | NA | non-coding | upstream | 121103 | 938996 ~ 939349 (-) |
| G225692 | NA | non-coding | upstream | 122688 | 940581 ~ 940782 (-) |
| G225577 | NA | non-coding | upstream | 136910 | 954803 ~ 955238 (-) |
| G225574 | NA | other | downstream | 268729 | 543647 ~ 546868 (-) |
| G225812 | NA | other | upstream | 641702 | 1459595 ~ 1466732 (-) |
| CI01000053_02225226_02226481 | YPELD, YPEL2B, YPEL1, YPELC, YPEL2 | other | upstream | 1399555 | 2225210 ~ 2226481 (-) |
| G226826 | NA | other | upstream | 1747999 | 2565892 ~ 2567072 (-) |
| G226963 | NA | other | upstream | 2178824 | 2996717 ~ 2997268 (-) |
| CI01000053_03551506_03551965 | NA | other | upstream | 2732440 | 3550333 ~ 3552847 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
