CI01000053_01759982_01765920


Basic Information

Item Value
gene id CI01000053_01759982_01765920
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 1758685 ~ 1766084 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_01759982_01765920.mRNA
ACCGCCTCCTCAAGTCAGGTAATGAAAACACATCCCCGCTGACATAACACACAAGTTGTATGGGGACTAGCAGGTAGCAGCCCTTTACTCGACCATTTTATGTTTGTTATCATAACACAATAAAAGCGTAGCACTTTATAGTCAGCTTATAACCGGACAACAGGATGGTGAGCAGTAAGGTGGAGGTGACAAGGCGCGAAATGCTACCTGAAGACACCGAACAGCCTGACTATTCATGCGACGGGTCACCGCTGCCAGCAAACCCTTCTTCAGAAGCAAGTGACCCGAATCTACGGATACCGACGCAGAACCGGTCAGGGGACAGTAACGCCAAGAAGAGCTGTCAAACAGGACCTAAAAAACACAAGTCCGCATCTGAAAAGAAATACCTCGGAGTTAGAGTGAAAATGCCAGTACGGGACATGCTCAGGAATATACGGATAGCCAAGGGTATTGACCCTAAAGATCTGCTGGGAAAACATTCTAAGGCATCTAAAGGGGATAAGAAACGAGTTACCACAGGAGGAAACCGGAGACGTATTCTGAAGAAACATCAAACAAAAGGTCTGGAGGAGCTTGCTATTATAGTAGAAGTGTTGGAGGAAGATCTTAAGACCTGTCAGTCATACAGATTGCCAAACAAAACCCGTTCAGCCTCATACTCTTCAGAGTTCTGGGTTGAAGAAGCATCTCAACAGGGTTTAATGAACACATACGGTCTGGAGAATGAGATACCTCTGTCTCCAAGCTACTCTGCACCCTCCGAAACCTCCCCTGTCCATTCTGTGTGCAGCTCTTACCCGTCCCCAACTTACAGCCAGGGTACTGATGTCTTCTTTGGGAATCAGGAAGAATATAGCAGTTATGAGTCAGATAAGTACAGGTATGATAATCTATATGGAATGACCTGCTCTCCTGCAAGCTCATGTGAATACCAAGTGCCCTCCCCACAAGAATCATTCCATGCCAGTCCCAACCCAGAAGTCTGGGAGGTTTCTCCGCAAGAGATGAAGTGTCCACCATGGCCATATTCTCAGCAGGAGGAGTGGAGCAGTATGACCTTTTTCTGGACTCAAATGGAAAGAGAGGAAACAATGCTGAAGAAGATATCTGACCAAGAGCTTCTTGCTGTAGATGAAAACGGAAAGATTCTTTTACACAGAGTTGTTGAGGAGGGAAAGCGATCCCTTGTGTATGTTATTGCCAGAAGGATGGTGGCTCTGAAGAAACTAGATATCAAAGATTCAGAGGGAAAGACTCCCCTTCATCTTGCTGCACAGAAGAATCAACACTTCATGGTGGCTGATTTGGTGTCACTTGGTGCAAATGTCAATGCGAAGGACCGATATGGGAAAACATGTCTCCATCTCAGTGCAGAGAATGGATATATTCGAGTCTTGGAGGTCCTGAAAGGTTTAATGAGAATTGGTGTATATATTAATTTGGAGGAAAGAGATGCAAACGGGCTCAGTGCGTTGCAGTGTGCAGCAGTGGCTCTTAACCACACTGTGCGGGAACTGGAGCTGTGTGAGTCTGCAGGCCATCTTAGGCTGCACTCCCTTCGCAAGGAGCAGATGATGGAAACGCTAGAGTGCCTCCTTCAAATGGAGTGCTGTACACACGCTCCGGATCATGGTCGCCTCAATTTAATGAACAGAGGTGTTGATTCCAAGCAGAGTGAACAAGCAGCCTTCTTTCAGTCAAATAAAATCAAGGTCAGCAACAACATGATTTAGAAGTGGTTTGGCTCATTTGCAGCTGCTTCTAGCAGAGTTGTTTTCTCTGCCTGGCCAGGCAGTGCTTTTAACTGACGGTAAATGTTTTTGAGTGAATACAAGCTTTAACCTGCCAATGAAGACGACATGTACGTGTATATATACACATGTATTTTAGTTATTGGTTACTTTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTTGAGGAGGATGAGAAAAGTCTTCAAGGCATGGTTAAGCTATGTATTATGCAACCATAGGTTTTGTTAAGTGTTTAGGTGAAAAGTGAGGTGTATCACTATGCAAAAACACAATGGTTGCCCATTAGCTGGTTTCTATGAAACTTCCACTGTTAGTTACGTTTGAGTAGCAAAATGTTTTAAAAAGGAAAAAATGTGGTAAGACAAATGAGTCATGCCACAGTTTCTATTTGCTCCAAGAGTAAATAGTTTTGATATTGAGGAGACTGTCATTTGTACATATACTGGCATACAATGGCAAAATGCAGTAACTGTGCCAACAATGGAACTAGTGTGGTTTTTTTTTTTTTTTTTACACTATTTCTCTGAATCTAGGAGACTTGGACAAAAAATGCAGTTATTGCATTTTGCTTTTGCACAACAATATATGTGGATGATTCCTAAAAGCATTTACAACAAAATTCTGATACGTTCGTTCAATAAGAAAAAAAAAAAGGGATGCCTTAAATTGTTCAAAAGTGACAGTAAAGACATTTATAATGCTATAAAAGATTTCTATTTCAAATAAATGCTGCACTTTAATTATTAAAGAATCCTGAAAAAAATTAGCAGTTTCTGCAAAAATATTAAGCAGCACAAAACTTTAAACATTAATAATTAAAATTTCTTGAGCAGAAATCAGCATATTAGAATGATTTCTGAAAGATCACGTGACACTGAAGACTGGATTAATGATGCTGAAAATTCAGCTTTGTCATCTTTGACATATACATTAAAATACAAAAACAGTTCTTTTAAATTCTAGTAATATTTCAGTTTTTTTTTTTACTGTATTTTTGATCAAATAAATGCAGCCTTGGTGAGCATGAGACTATTTTCAAAAACATAAAAAATATATGATTTTTTGATTTTCAAGGTATATGTTAGTATTTGAGGTGAGAAGCTTTAAAATATTCTTACTTTTGGAAAAAATTGCTTGTGTAAGAAACGGCTGTCCATTTCTTAATGCTGTATTTTGTAATAATGACCTAACTAACCCTAACCCTAACCCTGATTTAAGCTGTTCTTAATAGCTGCTTCCTCTCTGACAGAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_01759982_01765920.mRNA True 3033 mRNA 0.40 11 1758685 1766084

Neighbor

gene id symbol gene type direction distance location
CI01000053_01720326_01736077 NA coding downstream 22608 1720298 ~ 1736077 (-)
CI01000053_01655618_01660681 NA coding downstream 97948 1655548 ~ 1660737 (-)
CI01000053_01629699_01639689 NA coding downstream 118922 1629286 ~ 1639763 (-)
CI01000053_01603290_01609575 DIXDC1A, DIXDC1 coding downstream 149110 1602928 ~ 1609575 (-)
CI01000053_01166907_01193322 CADM1B coding downstream 565363 1166476 ~ 1193322 (-)
CI01000053_01819436_01827270 CSGR06H11ORF53, CUNH11ORF53, C4H11ORF53 coding upstream 52903 1818987 ~ 1828591 (-)
CI01000053_01847036_01856935 NA coding upstream 79642 1845726 ~ 1857230 (-)
CI01000053_01932882_01958701 SNX19B coding upstream 166771 1932855 ~ 1960172 (-)
CI01000053_01964024_01971099 RPS6KB1B, RPS6KB1 coding upstream 197330 1963414 ~ 1971099 (-)
CI01000053_01982526_02001150 VMP1 coding upstream 216239 1982302 ~ 2001150 (-)
G226609 NA non-coding downstream 10598 1747880 ~ 1748087 (-)
G226606 NA non-coding downstream 15920 1742460 ~ 1742765 (-)
G226513 NA non-coding downstream 135867 1619936 ~ 1622818 (-)
G225888 NA non-coding downstream 208826 1549507 ~ 1549859 (-)
G225886 NA non-coding downstream 213498 1544851 ~ 1545187 (-)
G226614 NA non-coding upstream 10366 1776450 ~ 1776658 (-)
G226553 NA non-coding upstream 163755 1929839 ~ 1931337 (-)
G226542 NA non-coding upstream 165464 1931548 ~ 1931880 (-)
G226645 NA non-coding upstream 297326 2063410 ~ 2063725 (-)
G225812 NA other downstream 291953 1459595 ~ 1466732 (-)
G225574 NA other downstream 1211817 543647 ~ 546868 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other upstream 451364 2225210 ~ 2226481 (-)
G226826 NA other upstream 799808 2565892 ~ 2567072 (-)
G226963 NA other upstream 1230633 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 1784249 3550333 ~ 3552847 (-)
G227604 NA other upstream 2321153 4087237 ~ 4087740 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008418 zgc:113279 coding NC_007126.7 CM002899.2 17848590 ~ 17856878 (+)