CI01000053_02817187_02856529 (TRAF4A, TRAF4)


Basic Information

Item Value
gene id CI01000053_02817187_02856529
gene name TRAF4A, TRAF4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 2815866 ~ 2856648 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_02817187_02856529.mRNA
AAATGGAAAAGTCACTGGGCCGATGATGGGCCTTGTAGTCAAAAAGTTCGAGAAGCACTGATCTAAACATTTATATTAAGCATTACTCGTTGAATTAGTTTGAAGTGGATGTTTAAATCATGGTTTATGAGTATTGTGATGATCAGAATCACAAACTCACATGGCAGCGCGTCAGGCTGTTTTACGCTGAATCTGCTGTATATAACAACCCTGAACTGAATCAATTATTTGTATCTGATTTGATCAGTGAAGTTGAAAATATATCCTTCTTTTCTTCTGCTTGCAGTGAGGGGGTCTTCAAGTGCCCGGAGGACCAGCTCCCACTGGATTACGCCAAGTCGTTTACATCCCTGCACTATACAGTGGAGTTACAGGGGCCTCGTTCTGTACAACTTTCCGTGAGTGGCTCTGCAAGAGTGTACGAAATGCTAATGTGTCAACAAAGGCAGGCTATGTTTATCTATCCTGACCCTGAGCTGGAGCAGCAGATACTGGCGCTGGCCATCCGCTGTATTCACAGTGAAGAGGGCTGCCGCTGGACCGGCCAGATGAAACAGCTACAGAGCCACTTCTCGACCTGCGCCTTCAATGTGATCCCCTGCCCCAACCGCTGCTCCGTCAAGCTAACGCGCAGAGACCTGCCCGAACACCTGCAGCACGACTGCCCCAAACGCAAGGTCAAGTGCGAGTTCTGCGGGAGCGAGTTCACAGGAGAGGCCTATGAGAACCACCAGGGCATCTGTCCGCAAGAGAGCGTGTACTGCGAGAACAAGTGTGGCGCAAGAATGATGAGGAGACTATTATCCCAGCACACCATGACAGAATGCCCCAAACGCACGCAGCCCTGCAAGTACTGCGGAAAAGAGTTTGTCTACGACACCATCCAGAACCACCAGTACCACTGCCCTCGCTTTCCTGTGCAGTGTCCTAATCAATGCGGCACCCCAAACATTGCACGTGAGGATCTGGCGAACCACGTGAAGGAGAGCTGTGGCAGCGCGCTGGTCCTTTGCCCCTTCAAGGAGGCCGGCTGCAAACACAGATGCCCAAAGATGGCAATCGGACGACACCTGGAGGAGAGCACAAAATCCCACCTAACCATGATGTGTAGTCTGGTGGGGCGGCAGCGGCAGGAAATCATGGAGCTGAGACGTGAAATGGAGGAGCTGTCAGTGAGTCACGACGGCGTTCTCATCTGGAAACTGACCGACTACTCACGCAAGCTGCAGGAGGCCAAACTCCGCAACAACCACGAGTTTTTCAGCCCGCCCTTCTACACGCATCGCTACGGCTACAAGCTGCAGGTGTCCGCATTCCTGAACGGCAACGGCAGCGGAGAGGGCTCGCATCTGTCCATCTACATCCGCGTGCTGCCCGGCGAGTACGACAACCTGCTGGAATGGCCCTTCTCCTACAAGGTGACCTTCTCCATTTTGGACCAGAGCGACCCGTCGCTGTCCAAACCTCAGCATATCACGGAGACCTTCAACCCTGATCCCAACTGGAAGAACTTCCAGAAACCGTGCAGCAGCCGGAACTCGCTGGACGAGAGCACGCTGGGTTTCGGCTACCCCAAGTTCATCTCGCACGAGGAGATCAAGAAGAGGAACTACATCCGTGACAACTCCATCTTCCTCAAAGCTTCCATAGAGATCCCACAGAAAATAATGGCCTGAGGACGTTTATTGGGACTTAAGTGATGTTTTGTCTTGACGTACATCTTTATGGACCCTTCTTCCTCTCAGAAACTCTACCGAAAGACTCAGAGCTCGTCTATCTGGTTATTTGGCTGGTTTTGAGGTATCTACACGTAGAAGTGTTTCGCAAAATCATCACTTTAAAATGTTTTGGATTTGCTTTCTAACACTCTCTTCCTCAATTTACAGCAACGCCTTTGGACATTCAGTAGTGCCTAGAACATTTATTTTAATTTAAATGTTATTTTTAAAGAGTGATTTATGTTATTTCTCTCACAAATGTTTGAAGATTGATTGAAGCGGACTGTGAAAGGCTATTCGTAACCTTTGCACTTTGCGAATGTTCTTCGGAGGCGAGGCAACGGAGCTCTGCGACACGATGGCAGGCATTCAGCGTACACACACTAACCTTCTTTTTACCCTTTTGTGTACACGTTCTCGCCCAGCACCGGTCCTTGATAAGAAACTCAAAGGAAACTCAAAAGAACGTTCATTTCCTGTTTAACTCGTTTTAAGTAAACTAACAGCTGTGAACTAAATGTAGCTTAACTCGCTCTAGAGGTTCGAGACTTCAAAACACAACGGTGCATTGTAGTATTTGATGATACGTTATGTTTTTCAATGCTAGATTACATTTGGGACCGATTCTGAGGTGCTAAAGCATGGTGGCAAGCTTTTTTCGTTATTGTACAGTGGAAAACGACACATTTTTCAAGCTCAAGCACTCCGGTTTGGATTGAAAGCCATGCGAGAGATTGTTTACATTCAGTCTGTGGGTGTTTGTGAGGGTTGCATTCACAGGTCACATGATCTATGACACGGACCAGTTTTTTGTACTGTATACCTGTATTCTTAACCAGCGTGTGAGGGCTTGTTATGTTGTGGCGGACAGACGAGCAAAAGGAACCAAATTTTTTTTAATATGTGAAAAAAATAAATAAATGTGAGCAACCTGTTGCGTTTGTGTCATAAACAGAGGGGGATTCTGAATGTGAACTCTGGACTCATGCTCAGTTGACTCTTTCTGTTCTTTGTCTTACTCTGTCGGTTGCTGGCAGATGATGAATAGAAAGGTGCGGGCACTCGCAACGGCCGCCCCAAAGCGCGTCGAGTGCGAGGGCGTCATATTCGAGTGGCGCTGGTAGCCATGGTTACCCGTGCCCATCAAAGCAGCATGTGAACGAGAGGAGAGTTCTTCCATGTGCCTGAGGAAGATGAGCCTTGTGCAATATGGCTGCCATTGCTCCATACAGGACTTTGTCAATACTTATTATATATATTATATGTGAATACTAATAAA

Function

symbol description
traf4a Predicted to enable tumor necrosis factor receptor binding activity and zinc ion binding activity. Acts upstream of or within establishment of epithelial cell apical/basal polarity; optic cup morphogenesis involved in camera-type eye development; and optic vesicle elongation. Predicted to be located in cytoplasm. Is expressed in several structures, including axial blood vessel; digestive system; immature eye; mesoderm; and nervous system. Orthologous to human TRAF4 (TNF receptor associated factor 4).
traf4 Enables several functions, including WW domain binding activity; enzyme binding activity; and tumor necrosis factor receptor binding activity. Involved in positive regulation of JNK cascade and positive regulation of protein kinase activity. Located in cytosol; fibrillar center; and nucleoplasm.

GO:

id name namespace
GO:0007250 activation of NF-kappaB-inducing kinase activity biological_process

KEGG:

id description
K09848 TRAF4; TNF receptor-associated factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_02817187_02856529.mRNA True 2997 mRNA 0.48 8 2815866 2856648

Neighbor

gene id symbol gene type direction distance location
CI01000053_02753283_02763401 NA coding downstream 52069 2753078 ~ 2763797 (-)
CI01000053_02739707_02746533 NA coding downstream 69284 2739494 ~ 2746582 (-)
CI01000053_02716472_02737494 TADA2A coding downstream 78289 2716012 ~ 2737577 (-)
CI01000053_02694095_02694625 DUSP14 coding downstream 119694 2693398 ~ 2696172 (-)
CI01000053_02533620_02536887 NA coding downstream 278026 2533593 ~ 2537840 (-)
CI01000053_02862161_02873752 NEK8 coding upstream 5083 2861731 ~ 2873752 (-)
CI01000053_02905181_02934126 GDPD5A, GDPD5B, GDPD5 coding upstream 48027 2904675 ~ 2934126 (-)
CI01000053_02968381_02979969 GUCY2F coding upstream 111575 2968223 ~ 2980046 (-)
CI01000053_03013700_03026612 RAP1GAP2, RAP1GAP2A coding upstream 157052 3013700 ~ 3026612 (-)
CI01000053_03072131_03076683 NA coding upstream 215341 3071989 ~ 3076683 (-)
G226925 NA non-coding downstream 37190 2777975 ~ 2778676 (-)
G226919 NA non-coding downstream 48364 2767252 ~ 2767502 (-)
G226906 NA non-coding downstream 50513 2765113 ~ 2765353 (-)
G226848 NA non-coding downstream 64674 2748578 ~ 2751192 (-)
G226946 NA non-coding upstream 101686 2958334 ~ 2961225 (-)
G226967 NA non-coding upstream 179947 3036595 ~ 3046469 (-)
G227003 NA non-coding upstream 324697 3181345 ~ 3181577 (-)
G227004 NA non-coding upstream 325355 3182003 ~ 3182298 (-)
G227042 NA non-coding upstream 365590 3222238 ~ 3308690 (-)
G226826 NA other downstream 248794 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 578470 2225210 ~ 2226481 (-)
G225812 NA other downstream 1349134 1459595 ~ 1466732 (-)
G225574 NA other downstream 2268998 543647 ~ 546868 (-)
G226963 NA other upstream 140069 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 693685 3550333 ~ 3552847 (-)
G227604 NA other upstream 1230589 4087237 ~ 4087740 (-)
G228651 NA other upstream 2927835 5784483 ~ 5787690 (-)
G228750 NA other upstream 3074944 5931592 ~ 5932241 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008387 traf4a coding NC_007126.7 CM002899.2 15516612 ~ 15593263 (+)
bowfin (Amia calva) AMCG00005477 traf4,LOC106581191 coding CM030142.1 CM030142.1 2766546 ~ 2778432 (-)