CI01000053_03013700_03026612 (RAP1GAP2, RAP1GAP2A)


Basic Information

Item Value
gene id CI01000053_03013700_03026612
gene name RAP1GAP2, RAP1GAP2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3013700 ~ 3026612 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_03013700_03026612.mRNA
ATTCGCAACAAAGGGAACTAATCAGCATAATGAGATACAGCTTTAGTCTCATCACAGCTAAGAGCCAAACATGTACTGAACAAGAGATTCTGCCTTTATTTATCTCTAAGGCAGCTGTTTTTCCTAGACTATCAGGAAACAGTTTACCATGTCGGCGTTATCCTAAGATCAAATTTCTTTTTCTCTCCTACCTACAGGATGACTACATCCCTTACCCCCGGATTGAGGATGTCCTGGAGAAGGGTGGTCCCTACCCTCAGGTCATTTTACCTCAGTTTGGTGGATACTGGATTGAGGATCCCGAGGCTCCAGTCGGGACGCCCACGTCCTCAGACAGCAGCTTCTGTGAGGAGGATGATGATGGTCTGAGTCCTGGTGGAGGAGGAGGCTTCGGCTTCAGGCTGGAGTGTAACAGCACCTCACGCGCTTACCGCAAACACTTTCTGGGCAAGGAGCACATGAACTATTACTGCACAGCCAGTAGTATGGGACACCTCATAATGTCTCTGAAGTATGAAGAGGCAGACGGACAGGAGTCACTCCGCATCATGCTCAGGTCAAAAACAAAGACTCTTCATGAGCGAATCCCACTTGAAGGTCTTCTCCAGCTTCCAAGCGTACCACAGATAGCCAAGCTGCTCTGCGATGATGTCACGGGTCTAAAGTTCAACCCCGTCCTCTACCCTAGGGCCTCGCAACTGATCGTCAGTTTTGATGAGCACGAAGTGAACAACACTTTCAAGTTTGGAGTCATCTATCAGAAGTTTGGTCAGACATCTGAGGAAGAGCTGTTCGGCAACAATGAGGAGACGCCTGCCTTTGCTGAATTCCTCAGTGTTTTAGGAGACAATATTGAACTGCAGGATTTTAAAGGGTTCAGAGGCGGTCTGGACGTGTCTCATGGACAGACAGGATCTGAGTCCGTCTATACTACGTTCCGTCAGAGAGAAATCATGTTTCACGTTTCCACAAAACTCCCCTTTACAGAAGGAGACATTCAGCAGCTCCAGAGGAAGAGACATATTGGCAATGACATTGTCGCAGCTGTCTTCCAGGAAGAGCCCACACCATTCGTACCTGATATGATTGCTTCCAACTTCCTTCATGCCTACGTATTAGTGCAGGCAGAAAACCCCTGCACTGATCATACCACGTACAAGGTGTCCGTCACAGCACGAGAGGATGTTCCTCCGTTCGGCCCCCCTCTTCCAAACCCTTCAGTCTTTAAGAAGGGTCCTGAGTTCCGGGAATTTCTCCTGGCAAAATTGATCAATGCAGAAAATGCATGCTACAAGTCAGACAAGTTCGCCAAGCTAGAGGAGAGGACACGGGCAGCACTGTTAGATAACCTTCACGATGAACTTCACAGACAGACACAGGCCACAGTAGGATTGGGCTCAGCTTCAGATGAAGAAAAGCTAGAAAATGGAGGTCATGGTGGGCTGCTGGAGTCCTTTAAGAGGGCCATGCGTGTGAGGAGCCACTCCATGGAGACAATGGTGACCCATAAACACAAGAGTCCAGGAGCCGTGGCAGGAGTCCCGTCCAGCGTCAGCGGTGGAGGACTCCCGCAAAACAGCATGGAGTGTACCAAGAGCACCTTCACTGTACTTCTATTCTCCTACTTTTTTTATTCAGATGAAATTCTTATCTTATCAAGTCCTCCAGTGCTGTCTGCAAAGTCTCCATTAAAGAGTCCTGTTAAGCGGCGCTCTGGTTTGTTCCCCAGACTGCACTCCAGCACAGAAAGTCCAACTGAGAAACATCCAACTCGCAGCAGTGACCAAAAAACAGAAGTGTTCCCACACTCACAGGAAATGAGGTCAGAGACACTGTCCAATCCGAGTTCACCAGAGATCTGCCCAAACAAAGAAAGGCCATTCGTGAAGCTAAAAGAGTGTAGCAGCAGAGCTAATATCTCTATCTCCCGATCCTCCTCCAGCACCAGCAGCTTCAGTAGCACAGCGGGGGATGGAGATGGACTGGAGGAGCTGGAAATG

Function

symbol description
rap1gap2a Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity. Predicted to act upstream of or within regulation of small GTPase mediated signal transduction. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RAP1GAP2 (RAP1 GTPase activating protein 2).
rap1gap2 Enables GTPase activator activity. Involved in regulation of cell size. Located in several cellular components, including centrosome; cytosol; and nuclear membrane.

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process

KEGG:

id description
K17708 RAP1GAP2; RAP1 GTPase activating protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_03013700_03026612.mRNA True 2000 mRNA 0.49 17 3013700 3026612

Neighbor

gene id symbol gene type direction distance location
CI01000053_02968381_02979969 GUCY2F coding downstream 33654 2968223 ~ 2980046 (-)
CI01000053_02905181_02934126 GDPD5A, GDPD5B, GDPD5 coding downstream 79574 2904675 ~ 2934126 (-)
CI01000053_02862161_02873752 NEK8 coding downstream 139948 2861731 ~ 2873752 (-)
CI01000053_02817187_02856529 TRAF4A, TRAF4 coding downstream 157052 2815866 ~ 2856648 (-)
CI01000053_02753283_02763401 NA coding downstream 249903 2753078 ~ 2763797 (-)
CI01000053_03072131_03076683 NA coding upstream 45377 3071989 ~ 3076683 (-)
CI01000053_03120615_03122486 NA coding upstream 93323 3119935 ~ 3122486 (-)
CI01000053_03142995_03145565 ARHGEF26 coding upstream 116383 3142995 ~ 3145565 (-)
CI01000053_03304977_03312227 NA coding upstream 277762 3304374 ~ 3312639 (-)
CI01000053_03403259_03403534 NA coding upstream 376425 3403037 ~ 3404029 (-)
G226946 NA non-coding downstream 52475 2958334 ~ 2961225 (-)
G226914 NA non-coding downstream 167518 2841623 ~ 2846182 (-)
G226925 NA non-coding downstream 235024 2777975 ~ 2778676 (-)
G226919 NA non-coding downstream 246198 2767252 ~ 2767502 (-)
G226906 NA non-coding downstream 248347 2765113 ~ 2765353 (-)
G226967 NA non-coding upstream 9983 3036595 ~ 3046469 (-)
G227003 NA non-coding upstream 154733 3181345 ~ 3181577 (-)
G227004 NA non-coding upstream 155391 3182003 ~ 3182298 (-)
G227042 NA non-coding upstream 195626 3222238 ~ 3308690 (-)
G227008 NA non-coding upstream 207815 3234427 ~ 3234738 (-)
G226963 NA other downstream 16432 2996717 ~ 2997268 (-)
G226826 NA other downstream 446628 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 776304 2225210 ~ 2226481 (-)
G225812 NA other downstream 1546968 1459595 ~ 1466732 (-)
G225574 NA other downstream 2466832 543647 ~ 546868 (-)
CI01000053_03551506_03551965 NA other upstream 523721 3550333 ~ 3552847 (-)
G227604 NA other upstream 1060625 4087237 ~ 4087740 (-)
G228651 NA other upstream 2757871 5784483 ~ 5787690 (-)
G228750 NA other upstream 2904980 5931592 ~ 5932241 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location