CI01000053_03318431_03325229


Basic Information

Item Value
gene id CI01000053_03318431_03325229
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3317222 ~ 3325513 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_03318431_03325229.mRNA
CCATAAAAACAGCCATTGACAACCACTGCCATGCCAATCAGGGCTCACAGCACTCATAAAACATATTTGACAACCACTGACCAGTCAGTTTGAGTGACAACACCCAGAAAATTAGGGGCCATAAATTAGACCATAGAAGGTGGCGCTTATGGAACAGCAGAGCTGTTTCCCCGGTAACCTCAGTAAACAAAGCAGCGCTGCTTATAAACACTACGCGTTACATGGAGGGAAGATGAAAAGAAAATGCTATCAAAACTTTTCTCAAGTCAGTCAAGTTCCCTTCAGAGATACATTCATAGAATTCATTCATATTTTAATTCATATCATTTCATATAATTTTCCTCAGCACTTGATTGTGAAGGTTGTAAAACCACTTCTTTCCATCATTTTTTAAAAAATAAATGAAACCACCCTGTGTCTACATGAGGCTGTTGCTTACTTTCATCATTTTAATGATGATAAAAATATTAAACGGTGATATACTAACCGTCAGAAATTGCATCATGGTTTATATGATGTTTTATATTATTTAAGCACCTGTAAGCTTCAGTTTTACAAAATTTTCTACTTCAATGTGCCATAAGAAGTCAAACTATAATCTTTTTTCTTTTTTATCATAGCATTTGAAAAATAGCAACCTACACGTGTAGAAACAATAGCTACAACTTGTCACAGTTGCAATATAAATCTAGCAAAAATATATTCTATTTATTAATAGGTTATAAATTCTACAGGTTAGCCAAATTGACCACCACAATAAAATAAAACAATAAAACGTGATAAATTCTAGTAAGGGAGGGTCATGAATAGTTATAAAAGCTTTCTAACAAATGTTGGCGCAAGATTGTTTTTTCCTCTTTTCATCAGTCTTTTGTTCATTTTGTTCATCAGTCTAGTTTTAAAGTGTTTAACTCTCAATAGAATTCAAATGGATTGCTCATTTTATCATCATTGTCATGATAGGAATGGCTCGTTGAAATCTTATCACACTTTTGGAGCGTGATAAGATTCAGAGTAGGCCTATAGCTAGGGTCATTCGTGCTACACTGATGCATTAAATAAACCAGGCTGATGGTCTTTTCAGTTTGTATGGGAACTTAGCGCTTATAAAAGCTCTGAACGCATGATGTATATAATTAATTAATAGTCTTATTCGCTCACTACCATATTTCTCACGCCGTGTCCGCTGCAGTGAGAGAACTGCGCACAATGCACCGCTCAAAACACAGAGCGTCTTTTATTAGTTCTCTCACTGCAGCGCGAACATGCACTATCAAGCCTGGTTTTTTAGTCAATGATGGGTGGGAAAAGTCTATGAATATGGCCGCTACCCTGCCAAGCCCCCTCACAACTCATGTGCTGAATACAGCCCAAGGAGTTCCTGGAGCCAACATCACCATTATCCTCTATCGCCTAGACCCCATCTCATCGGTGTGGAACTTACTCACAACAGGGATAACTAATGACGATGGAAGGTGTCCTGGGTTAATTTCAAAAGAAAGCTTCATTGCTGGCATGTATAAAATGCGTTTTGAGACTGGAATGTATTGGGATGCCTTGGGGGAGTCGTGCTTCTATCCATATGTAGAGTTTTATGACTTTCTATTGAGTTTTGACATGCTTCACTGCCGGCGACGATGGGATACTGGACCATATGAAAAGCCGTCGATTGAGTCAGCCCTGCAAACCTGTTGGTCGATACGCAGTGGACAGTGGAAATATGCACTCATCCCAGTTGATGTCCCTCTGGCAGAGAGGCCTTACCAGAGTATCTGAAGCCCATCCAAGTCCGGCAGCTCCACCAGGGTCTCCCTGCTCAGCCGAATGAAAGTGTACACAAATATGTTTTTTCTGTTTTATATACTGTTAATTGAAAATGTTATGTTGTTTTTCTGAAAGCAAAAGTTCTTTTGTAAATAGTTGTAAAGGTACTTTATGTAATGTAGCTATAGAATGATATATTATATATGTAAAAACATTTAATTTACATGATGAAAAAATGATTGTATATGTTGTATATGTGTAATGTTTCATGTAAAATTATAAGTTGCATAAAAGAA
>TU256805
AAGTATCCCAATCCCAGACGTGGCAACAATGAGCCGAGAGTCGTTACATGGCTAGCGGCTGTGTGACAGACAGCTGACAGTTGATGTTTGTGTGTGCATTTTAAAGTTTTATGACTTTCTATTGAGTTTTGACATGCTTCACTGCCGGCGACGATGGGATACTGGACCATATGAAAAGCCGTCGATTGAGTCAGCCCTGCAAACCTGTTGGTCGATACGCAGTGGACAGTGGAAATATGCACTCATCCCAGTTGATGTCCCTCTGGCAGAGAGGCCTTACCAGAGTATCTGAAGCCCATCCAAGTCCGGCAGCTCCACCAGGGTCTCCCTGCTCAGCCGAATGAAAGTGTACACAAATATGTTTTTT

Function

NR:

description
HIU hydrolase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_03318431_03325229.mRNA False 2060 mRNA 0.37 5 3317222 3325513
TU256805 True 367 lncRNA 0.49 2 3324351 3325304

Neighbor

gene id symbol gene type direction distance location
CI01000053_03227130_03234740 CD151, CD151L coding upstream 82482 3227130 ~ 3234740 (+)
CI01000053_03088253_03119757 DHX36 coding upstream 197340 3088253 ~ 3119882 (+)
CI01000053_03068131_03069156 NA coding upstream 247973 3068038 ~ 3069249 (+)
CI01000053_02999291_03000591 NA coding upstream 316291 2998835 ~ 3000931 (+)
CI01000053_02989765_02990808 TSKU coding upstream 325053 2989765 ~ 2992169 (+)
CI01000053_03405451_03427728 PDCD5.S, PDCD5 coding downstream 79539 3405052 ~ 3428148 (+)
CI01000053_03448295_03455864 NA coding downstream 121718 3447231 ~ 3455940 (+)
CI01000053_03484197_03496907 NA coding downstream 158217 3483730 ~ 3497830 (+)
CI01000053_03520283_03525417 NA coding downstream 194519 3520032 ~ 3525462 (+)
CI01000053_03545885_03548117 NA coding downstream 220372 3545885 ~ 3548789 (+)
G226332 NA non-coding upstream 131499 3185514 ~ 3185723 (+)
G226257 NA non-coding upstream 237071 3079904 ~ 3080151 (+)
G226268 NA non-coding upstream 253087 3031203 ~ 3064135 (+)
G226292 NA non-coding upstream 270693 3036602 ~ 3046783 (+)
G226261 NA non-coding upstream 303420 3011663 ~ 3013802 (+)
G226424 NA non-coding downstream 138703 3464216 ~ 3473595 (+)
G226426 NA non-coding downstream 146518 3472031 ~ 3472447 (+)
G226392 NA non-coding downstream 183167 3508680 ~ 3511385 (+)
G226438 NA non-coding downstream 208662 3534175 ~ 3541583 (+)
G226443 NA non-coding downstream 215322 3540835 ~ 3541368 (+)
G226347 NA other upstream 42311 3272374 ~ 3274911 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 721755 2592558 ~ 2595467 (+)
G225952 NA other upstream 1443927 1872874 ~ 1873295 (+)
G226399 NA other downstream 295285 3620798 ~ 3697529 (+)
G227317 NA other downstream 1089438 4414951 ~ 4415593 (+)
G228257 NA other downstream 2050040 5375553 ~ 5378449 (+)
CI01000053_05471449_05512831 LRRC75B other downstream 2183731 5471449 ~ 5513074 (+)
CI01000053_06725452_06758944 NA other downstream 3397686 6725452 ~ 6758944 (+)

Expression


Co-expression Network