CI01000053_03484197_03496907


Basic Information

Item Value
gene id CI01000053_03484197_03496907
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3483730 ~ 3497830 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_03484197_03496907.mRNA
TTATAAAAAATAATGAATACTTTATGCTAAAACATTGCTTGACAATACTTAGGACAATATGCAAAAGTGATTTTTGTATCATTTTGCATTCAATTTGCAAATTAAAAGTCCTGCTGAAAAAGAACAATCATAGCAAGGGACAGGCCAAAAACCTTACCCTTATGAGAATAAATGCAATTTTAATTATTTAAAATAATATTTAATTGACTTTACTTTGGTGTAATATTGATAAAACAATACACAGTATTGATATGTTTTTAAATCACAAATTTATTTGTTGTTATAGTACTTCTATGTCTGATTATTTCTTAGGGATGCAAAAGGCACCGATTTCGTGGAATGACCCAGATGTGTTTTGAAGGCCTCATGGCCTATTACATGACTGTAGGAACTATTACAAGGTCAGGAGCATTGAAGAAAGCCATGTGACCCACTGAGTATTCTGCCAAGTTAGGGGTATTTTCAGAATGAATGATGTCATGGTGAGGCTTCCCTCCTCAGGAGCCGGTTGTCCTTGGAAAATGCTACATCTTGCCTATGATAAAAGGTTGAACATCATTTGGCAGGTTGCCACTATTAGAGAGATAGGTTCTCACTCACTGATGGCTTTGGCAACATATTTAGTTGGACAGACACCATTTCCTGAGTTCAGTGTTGTGCTGATGTTGGATGATCTGCAAATACTGTATTATGACTCTGTCACATGGAAAGCTGTCTATCGCTCTCACAGTACTGATTCACAGTTCAATAATGAAGTGCAAAGCGATGCTGATACTGTATTTAACGCCATGTATAATAGCATGAAAACTCGTGATTTTTATGTTAAGAAACACTTAAATCACACAGATGGTGTACATGTCCATCAGAGACTTATTGGATGTGAACTGTTGAATGATGATAAACCAGGTCCACTTCATTTCTGGGATGCTTTTGATAGACAAAATATGGAGGAGTTCACATATGACCTGGGAAAAAACGATATCCAGATCAAAAAGCCATGGATGATACCATGGGACCAAGTGAAACAGCTTCATATAAAGTTTCTATTTAAAAATGTTTATCATCCTATTTGCATTAAAGTTTTGCGAAGGTACCTGAATATGGAAAAGAACAATGTGATGAGAAAAGTGAAACCCAGAGTCAGACTCATGAGGAAGACACTCACAGACTCTCAAGGGCTTCAGATCAGCTGTCTGGCCACTGGTTTTTACCCCCGTCACATTAACCTGACTCTGTTCAGAGATGGTCAGCCTGTGGATGATGATCAGATCACAGGAGGAGAGATTCTGCCCAACGGAGACGGAACTTACCAGATGAGGAAGAGTTTGGTGATCAGCTCAGAGGAACTACGTGAGGGACACAGATACAACTGCACAATGAAGCGCCTCAATCTGGACAACAAACTGGACATTACGTTTGTTTCAGATGTGGCTGAATGTGACCCAGGATCCCTCAGTCTGTCTGTAGTTATCAGTGTGCTGGTGTTACTGTGTGTGGCTGTTCTCATCATAACTGCACTCATCATCTGGAGGAGGAAGAGACGAGCTGCTGGACGAGTCTCCGAGATGTCACAGTGTAAATACTTCCCTACTCCATATGCTGCCAGGCTAAAGCATTCAAAATGGAAACTTCTGCCGTGGCTCAATTATCCGGGATTGGGATGGTGGAAGGAGCAGAAGAACCAGAAGATCAGATCAGGCAGAGATCTACTGACGTCTGACAATGTCGTCTTTTCGAAGTCTTTTCAACGAGTTTTTGCTGGGTGGGTATCTTACAAAGCTGTCTTGGCTTATGATAGCAAGAATGGTACATCTCTATAGGGATGGATTTCGGGTCCGGTTCGGGTTAAACTATAACAGTAGCCTATATATACCGTTCGGGTTCGGGTCGGGTCAAACGATCTCGGGTACGGGCCGGGTACGGGCCGGGTTCGGGCCTCAGTTTAAAGCCCGTGCAGGGCTGCGTTTCCCAAAAACATCGTAAGCCTAGGTTTTACGATCAACTTAGGTTTATGTTGTTTTTCGGGAAACGCAGCCCAGACCTCTAGTATGTGGACGAGACTTTTATTTTGGTCTGGTGTTATGACATCATAAGGCTGCACCGCTCTCTGGCTAAACAAAGGTTTGAGTTTTTGAACGCTTAATTATTTGATGTGTTTAAATCGAAACAAATCTTTCAATCTACTCATAGTTTTTACAAGTAATGTGAAATGAATGGATATTATGTGTGGTGCCGTGTGACACTTTAAAGTTCAGTTTTCAGTTGATTGTTGCCGTTTTCTCACATTCAATTTCTAAATCGTGACTTCAAAAATGATTATTTAATCATATTCCACTCATTTTATTATATTTTTGTGTCTGAAAACTCATCTATTAAACGTTACATGAACTGATAGTCTTGCTCGTAAAACGCTATTTTATTATTGTTAACTGTTTGTGACTAAAGTACGTATATACGTGAGTTACAAATCAGGTTTGGATTTATATTTCTTTCTATTAATTGTTTTCTTCATTTTAAACTTGGAAAATGTCCAAACATACAGGAACAAGAAACTCTTGGTGAAACAACTGAGATCAACACTGTTTTCAAGATGGCGTTTATTTAAGAAGAGACTGGAGACATGAGAATTTCAGAACCATTCAGAGCGAAACATGAAGATACTGAGGAACAAACAGGTTGGTTTTCAAATGTGAACGGAGAACTTATTTTTTTTTTCCTCATTAAAATGTTGACATTTAAGGAA

Function

NR:

description
nonclassical MHC class I antigen

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_03484197_03496907.mRNA True 2743 mRNA 0.39 8 3483730 3497830

Neighbor

gene id symbol gene type direction distance location
CI01000053_03448295_03455864 NA coding upstream 27790 3447231 ~ 3455940 (+)
CI01000053_03405451_03427728 PDCD5.S, PDCD5 coding upstream 55582 3405052 ~ 3428148 (+)
CI01000053_03318431_03325229 NA coding upstream 158217 3317222 ~ 3325513 (+)
CI01000053_03227130_03234740 CD151, CD151L coding upstream 248990 3227130 ~ 3234740 (+)
CI01000053_03088253_03119757 DHX36 coding upstream 363848 3088253 ~ 3119882 (+)
CI01000053_03520283_03525417 NA coding downstream 22202 3520032 ~ 3525462 (+)
CI01000053_03545885_03548117 NA coding downstream 48055 3545885 ~ 3548789 (+)
CI01000053_03572527_03585944 NA coding downstream 73758 3571588 ~ 3586271 (+)
CI01000053_03587596_03590525 NA coding downstream 88952 3586782 ~ 3590558 (+)
CI01000053_03602535_03605174 NA coding downstream 104660 3602490 ~ 3605540 (+)
G226424 NA non-coding upstream 10135 3464216 ~ 3473595 (+)
G226426 NA non-coding upstream 11283 3472031 ~ 3472447 (+)
G226332 NA non-coding upstream 298007 3185514 ~ 3185723 (+)
G226257 NA non-coding upstream 403579 3079904 ~ 3080151 (+)
G226392 NA non-coding downstream 10850 3508680 ~ 3511385 (+)
G226438 NA non-coding downstream 36345 3534175 ~ 3541583 (+)
G226443 NA non-coding downstream 43005 3540835 ~ 3541368 (+)
G226451 NA non-coding downstream 80213 3578043 ~ 3578316 (+)
G226466 NA non-coding downstream 172088 3669918 ~ 3674199 (+)
G226347 NA other upstream 208819 3272374 ~ 3274911 (+)
G226292 NA other upstream 436947 3036602 ~ 3046783 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 888263 2592558 ~ 2595467 (+)
G225952 NA other upstream 1610435 1872874 ~ 1873295 (+)
G226399 NA other downstream 122968 3620798 ~ 3697529 (+)
G227317 NA other downstream 917121 4414951 ~ 4415593 (+)
G228257 NA other downstream 1877723 5375553 ~ 5378449 (+)
CI01000053_05471449_05512831 LRRC75B other downstream 2011414 5471449 ~ 5513074 (+)
CI01000053_06725452_06758944 NA other downstream 3225369 6725452 ~ 6758944 (+)

Expression


Co-expression Network