CI01000053_03551506_03551965


Basic Information

Item Value
gene id CI01000053_03551506_03551965
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3550333 ~ 3552847 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_03551506_03551965.mRNA
ACCGTTCTCATGTAATCATAATTTCAGACTTTCTGATAGGCTAATAATAGTTTGATTTCTTTCTAAAAAAAAAAAAAAATAATAAAAAACATCTGATCGATCATTTTGCTAGTTTGATTTTCAAGATATAAAGATACTAATCTGACTGTCAGTGAACAGTTTCAGTTTGTTTTCTGTCATGTGACCTTTTCTTTTAAACTGAGTCGATGCCAGTCTGGCTCTGAATTCAGTATGGGTTGCAAGTGTTTGTTGGCTCGGTGTAAGAATTTGACAGGTTGGCACTGGTTCCCCCGCGATGCTGACAGAGCTAGATTGTGGCTGCAGGCGTTGGGATCCCCATCAACTCCCGACACATCAAGATTGTTTGTGTGTAACAAGCATTTTTCACGGGAGAGCTTTTATAGACATGAGGACTTTGGCATTGCTCATGGAGGTAATCTCAGAGGAGAAGACACTGAACAAAGTCTCAAATACCTTTCCATCGCTACAGGGCAGCCGCTGCTGGCTGGAAATATTGGAATTTTGCCCAGTGACTACAGCTGAAGGAGGAAGTCCAAATATGGTCATTGGTGAGATGAATTTATCATGAAGTCCAACAACAAGCAGCCATGCTTCTGGGTTCTTCACACAGTTGGATCAGAAATGGCTATTCAGAGTAAATGTAGTTCTAATCACTGTTTTAGTTATGTGAAACATTATGTAATGTAACGTTTTTTGTTAACGTTAATAAA
>TU257615
CTCTGAATTCAGTATGGGTTGCAAGTGTTTGTTGGCTCGGTGTAAGAATTTGACAGGTTGGCACTGGTTCCCCCGCGATGCTGACAGAGCTAGATTGTGGCTGCAGGCGTTGGGATCCCCATCAACTCCCGACACATCAAGATTGTTTGTGTGTAACAAGCATTTTTCACGGGAGAGCTTTTATAGACATGAGGACTTTGGCATTGCTCATGGAGGTAATCTCAGAGGAGAAGACACTGAACAAAGTCTCAAATACCTTTCCATCGCTACAGGGCAGCCGTTTCACTTTAGCTGCTGGCTGGAAATATTGGAATTTTGCCCAGTGACTACAGCTGAAGGAGGAAGTCCAAATATGGTCATTGGTGAGATGAATTTATCATGAAGTCCAACAACAAGCAGCCATGCTTCTGGGTTCTTCACACAGTTGGATCAGAAATGGCTATTCAGAGTAAATGTAGTTCTAATCACTGTTTTAGTTATGTGAAACATTATGTAATGTAACGTTTTTTGTTAACGTTAATAAATGTTATTATAAAGTGATAATGTTTTATAGTGAAGAATTGTACATAGGTTGTTTTGAACTTGAAAAAAACACACACAAAAAAATGTATTCAACAGTTATATTTTGTTGGAAATGTAACTTGTTGTTCATAAATTGTAGTGCCATTAACATTTCAAATGAAGGATTTATTATGATTTAGCAGATACAGTATATAACTTATTATGATTTAAGATTCATTAAATATTTATTAAAGCAAATGTTAAAGTGTGGTTTAAAATAATCTTGTTATGATCAGAATTCTCGAATGAGGCCTTAAAGAAAGCTATTCTTGTTTTTGATATTAGTTTTTGATCTGTCTGCTCTCCCATCATAGTTATGAATAAACATGTAATACATATTTTTTAACATATAATAGATAACTTTAAAATGTGTAATATATCTTTAATATATTTCTAAATGAACCATATATAAGCTTTTCCAACATTTGAAGTCAAATTGACTGATTGTTCTCTTTACTGTTGCATCCTCATTTTTTGTTTTCTTGTTTTGGGAAGCAACAGGAATTCCAAGATTTTGAATGTATTGTGTTCCTTATGTTTCAGGCTATAAATTTAGCTTGTCTGGTGTTTTCTCATGTGTGTATCTTATCAACATCAATTATTCAAATCTTTTTGGAAAGCTTGTATTACAAATGCATATTTTCAATAAAAAAGACTTGAAGATCTTTAAGTTTGTGGGGTTCTGTCTACATGTGGCAATGTGTGCCTCTCACAAGGTCTCTGGTGAGAATGTTTTCCTATCCCTGGCCAGGTGTGACCCTTAGGTCTCAGGATCCTGTCCAAACAAAAAGGTTTTCTATTAACAACTTATAGTTGGAAATTACTTTGTTCTGGTCTGGGTATTTAAGGGAAAGTGGAAAAACAGTCATTGGGGTTCTGTAAACCGAATACCCCCAAACAGTACTGTGTGATGCCTGCACTCACACTGTGTGTACTTCTGCTGTCTGG
>TU257617
CTCTGAATTCAGTATGGGTTGCAAGTGTTTGTTGGCTCGGTGTAAGAATTTGACAGGTTGGCACTGGTTCCCCCGCGATGCTGACAGAGCTAGATTGTGGCTGCAGGCGTTGGGATCCCCATCAACTCCCGACACATCAAGATTGTTTGTGTGTAACAAGCATTTTTCACGGGAGAGCTTTTATAGACATGAGGACTTTGGCATTGCTCATGGAGGTAATCTCAGAGGAGAAGACACTGAACAAAGTCTCAAATACCTTTCCATCGCTACAGGGCAGCCGTTTCACTTTAGCTGCTGGCTGGAAATATTGGAATTTTGCCCAGTGACTACAGCTGAAGGAGGAAGTCCAAATATGGTCATTGGTGAGATGAATTTATCATGAAGTCCAACAACAAGCAGCCATGCTTCTGGGTTCTTCACACAGTTGGATCAGAAATGGCTATTCAGAGTAAATGTAGTTCTAATCACTGTTTTAGTTATGTGAAACATTATGTAATGTAACGTTTTTTGTTAACGTTAATAAATGTTATTATAAAGTGATAATGTTTTATAGTGAAGAATTGTACATAGGTTGTTTTGAACTTGAAAAAAACACACACAAAAAAATGTATTCAACAGTTATATTTTGTTGGAAATGTAACTTGTTGTTCATAAATTGTAGTGCCATTAACATTTCAAATGAAGGATTTATTATGATTTAGCAGATACAGTATATAACTTATTATGATTTAAGATTCATTAAATATTTATTAAAGCAAATGTTAAAGTGTGGTTTAAAATAATCTTGTTATGATCAGAATTCTCGAATGAGGCCTTAAAGAAAGCTATTCTTGTTTTTGATATTAGTTTTTGATCTGTCTGCTCTCCCATCATAGTTATGAATAAACATGTAATACATATTTTTTAACATATAATAGATAACTTTAAAATGTGTAATATATCTTTAATATATTTCTAAATGAACCATATATAAGCTTTTCCAACATTTGAAGTCAAATTGACTGATTGTTCTCTTTACTGTTGCATCCTCATTTTTTGTTTTCTTGTTTTGGGAAGCAACAGGAATTCCAAGATTTTGAATGTATTGTGTTCCTTATGTTTCAGGCTATAAATTTAGCTTGTCTGGTGTTTTCTCATGTGTGTATCTTATCAACATCAATTATTCAAATCTTTTTGGAAAGCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107677180 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_03551506_03551965.mRNA False 731 mRNA 0.39 2 3551318 3552196
TU257615 False 1509 TUCP 0.35 2 3550333 3551978
TU257617 True 1183 TUCP 0.33 2 3550659 3551978

Neighbor

gene id symbol gene type direction distance location
CI01000053_03499011_03502122 NA coding downstream 49055 3498398 ~ 3502263 (-)
CI01000053_03456147_03457909 NA coding downstream 93119 3456035 ~ 3458199 (-)
CI01000053_03403259_03403534 NA coding downstream 147289 3403037 ~ 3404029 (-)
CI01000053_03304977_03312227 NA coding downstream 238679 3304374 ~ 3312639 (-)
CI01000053_03142995_03145565 ARHGEF26 coding downstream 405753 3142995 ~ 3145565 (-)
CI01000053_03558891_03566444 NA coding upstream 6587 3558783 ~ 3569352 (-)
CI01000053_03592810_03602102 NA coding upstream 40459 3592655 ~ 3602437 (-)
CI01000053_03620673_03622682 NA coding upstream 68044 3620240 ~ 3622685 (-)
CI01000053_03625343_03653163 NA coding upstream 72774 3624970 ~ 3653334 (-)
CI01000053_03665103_03666630 NA coding upstream 112394 3664590 ~ 3667700 (-)
G227047 NA non-coding downstream 4177 3484863 ~ 3547141 (-)
G227225 NA non-coding downstream 9996 3540756 ~ 3541322 (-)
G227049 NA non-coding downstream 60409 3395768 ~ 3490909 (-)
G227174 NA non-coding downstream 122996 3405148 ~ 3428322 (-)
G227184 NA non-coding downstream 130502 3413501 ~ 3420816 (-)
G227069 NA non-coding upstream 51702 3603898 ~ 3606489 (-)
G227046 NA non-coding upstream 65412 3617608 ~ 3620177 (-)
G227236 NA non-coding upstream 83521 3635717 ~ 3636283 (-)
G227051 NA non-coding upstream 154343 3706539 ~ 3707610 (-)
G227071 NA non-coding upstream 177282 3729478 ~ 3729711 (-)
G226963 NA other downstream 554050 2996717 ~ 2997268 (-)
G226826 NA other downstream 984246 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 1313922 2225210 ~ 2226481 (-)
G225812 NA other downstream 2084586 1459595 ~ 1466732 (-)
G225574 NA other downstream 3004450 543647 ~ 546868 (-)
G227604 NA other upstream 535041 4087237 ~ 4087740 (-)
G228651 NA other upstream 2232287 5784483 ~ 5787690 (-)
G228750 NA other upstream 2379396 5931592 ~ 5932241 (-)

Expression


Co-expression Network