CI01000053_03670303_03671237


Basic Information

Item Value
gene id CI01000053_03670303_03671237
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3669984 ~ 3671268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_03670303_03671237.mRNA
ATATAAAAACAAATAAACAGCCTCTATGAGTGACTCGCCCTTATCATGCTCTATAAAACATATGTACACTTGTCACCATGTGATTACCATGTGCTTATTTCCATATATTAGACAAAAATATAACTCAAAAAGGGTGAAATGACAAAAATAACCACAAAGATAAGTGAAATAACATTATACACATGAATTAGAGAGAAAATATAGATAATTAATAACTAAAATAAAGATTAATTAAGATTATCAGGAGTCATATTACAACTCACCTCTTCCATGTATTTCCAAATGCAAAGAGGAAGAGGAGGAGACAGAACAGGAAATTATGTTGGCTCATGATGACATCACCACAATTAAAAGCGAAAACACTCTATATCAGGCAGTCATATCAGTACCACCAGAAGTCATTATCCGGTTGGACAGGGAAGCTAATGAGAATCAGAAAGCTGTTCTGGTGTGCAGTGCTTATGACTTCTACCCCAAACCCATCAAGCTGACATGGATGAGAGATGATAAAGAAATGACAGCTGATGTGACCTCCACTGAGGAGCTGGCTAACGGAGACTGGTTCTACCAGATTCACTCCCACCTGGAATTCTTTCCCAAACCTGGAGAGAAGATCTCCTGTGCGGTGGAGCACGCCAGGTTTTATGAATATCCTTTCATTTTTACAGATCCTTCTCTATCCGAGTCTGAAAGGTCTAAGATAATTCTTGGGGCTGGTGATGGGGGTCGTGATGGCAGCCGGAGGACTGATCTACTATAAAAGAAAACAAACAGGTTGGTATTCATAATGA

Function

NR:

description
MHC TLA beta-1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_03670303_03671237.mRNA True 791 mRNA 0.39 2 3669984 3671268

Neighbor

gene id symbol gene type direction distance location
CI01000053_03602535_03605174 NA coding upstream 64444 3602490 ~ 3605540 (+)
CI01000053_03587596_03590525 NA coding upstream 79426 3586782 ~ 3590558 (+)
CI01000053_03572527_03585944 NA coding upstream 83713 3571588 ~ 3586271 (+)
CI01000053_03545885_03548117 NA coding upstream 121195 3545885 ~ 3548789 (+)
CI01000053_03520283_03525417 NA coding upstream 144522 3520032 ~ 3525462 (+)
CI01000053_03744819_03746561 FZD10 coding downstream 71877 3743145 ~ 3747253 (+)
CI01000053_03791537_03801726 PIWIL1 coding downstream 120269 3791537 ~ 3801726 (+)
CI01000053_03810170_03813896 NA coding downstream 138902 3810170 ~ 3814136 (+)
CI01000053_03938224_03984584 RIMBP2 coding downstream 265555 3936823 ~ 3985703 (+)
CI01000053_03991499_04013196 NA coding downstream 320231 3991499 ~ 4013333 (+)
G226376 NA non-coding upstream 3033 3311440 ~ 3666951 (+)
G226451 NA non-coding upstream 91668 3578043 ~ 3578316 (+)
G226438 NA non-coding upstream 128401 3534175 ~ 3541583 (+)
G226443 NA non-coding upstream 128616 3540835 ~ 3541368 (+)
G226392 NA non-coding upstream 158599 3508680 ~ 3511385 (+)
G226397 NA non-coding downstream 26457 3697725 ~ 3700465 (+)
G226476 NA non-coding downstream 29772 3701040 ~ 3701264 (+)
G227289 NA non-coding downstream 314746 3986014 ~ 3990403 (+)
G227308 NA non-coding downstream 319275 3990543 ~ 3990883 (+)
G226347 NA other upstream 395073 3272374 ~ 3274911 (+)
G226292 NA other upstream 623201 3036602 ~ 3046783 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 1074517 2592558 ~ 2595467 (+)
G225952 NA other upstream 1796689 1872874 ~ 1873295 (+)
G227317 NA other downstream 743683 4414951 ~ 4415593 (+)
G228257 NA other downstream 1704285 5375553 ~ 5378449 (+)
CI01000053_05471449_05512831 LRRC75B other downstream 1837976 5471449 ~ 5513074 (+)
CI01000053_06725452_06758944 NA other downstream 3051931 6725452 ~ 6758944 (+)

Expression


Co-expression Network