CI01000053_03696522_03699590


Basic Information

Item Value
gene id CI01000053_03696522_03699590
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3696458 ~ 3699699 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_03696522_03699590.mRNA
ATTGATTTGTGGTCGTGTTAGGGATACGCGTGTGCATGCGCTTAATTTCTTTTCTTTCTTTTTTTTTTTTTTTTTTACAGACATCACCTGGATTCATTAATTTTAGAGAATGCTCATGCTTGCGTATCTGTTGTCATGCTTGACAGTTGTCAATACAGGTTCTCACTCACTGATGGCTTTGGCAACATATATAGTTGGACAGACACCATTTCCTGAGTTCAGTGTTGTGGTGATGTTGGATGATCTGCAAATAATGTATTATGACTCAATCACATGGAAAGCTGTCTATCGCACTAACAGTGATTCAAAATACTATGATGAAGAGCAAAGTGATGCTGGTGTTGTGTTTCAAGACACGTATAATGGCATGAAATCCCGTGATTTTTATGTTAAGGAACACCTAAATCACACAGATGGTATACATGTTCATCAGAGACTTGCTGGATGTGAATTGTTGAATGATGGTAAACCAGGTCCACTTCTGAGATTTGATGCTTTCGATGGACAAAATTTGGAGGAGGTGACCTATGATCTGGAAAAAAATGATATCCAGATGGAAAAGCCATGGATAATACCGTGGGACCAAATTAAACGGCAACATATGAAATTTTTATATGAAAATGTTTATCATCCTATTTGCATTAAAGTTTTGCGGAGGTACCTGCATATGGAAAAGAACAATGTGATGAGAAAAGTGAAACCCAGAGTCAGACTTATGAGGAAGAAACTCACAGACTCTCAAGGGCTTCAGATCAGCTGTCTGGCCACTGGTTTTTACCCCCGTCACATTAACCTGACTCTGTTCAGAGATGGTCAGCTTGTGGATGATGATCAGATCACAGGAGGAGAGATTCTTCCCAATGGAGACGGAACTTACCAGATGAGGAAGATTTTGGAGATCAGCGCAGAAGAAGACGAGGCTCTGAGAAGTCAAAGAGTGATTACTCCCTTACTTCATCTTCCACGCAAGATGAAACATGAGTCTAAACAGGCCTATATTAAATTCAAACTTAAAATTAAAAAGCCTTAGCATTTGCTCAGAGATACCATCAGGTTTTGTTATGATAATGACCATCAAGTGATATTTGATTAAA

Function

NR:

description
nonclassical MHC class I antigen

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_03696522_03699590.mRNA True 1094 mRNA 0.39 6 3696458 3699699

Neighbor

gene id symbol gene type direction distance location
CI01000053_03665103_03666630 NA coding downstream 28758 3664590 ~ 3667700 (-)
CI01000053_03625343_03653163 NA coding downstream 43124 3624970 ~ 3653334 (-)
CI01000053_03620673_03622682 NA coding downstream 73773 3620240 ~ 3622685 (-)
CI01000053_03592810_03602102 NA coding downstream 94021 3592655 ~ 3602437 (-)
CI01000053_03558891_03566444 NA coding downstream 127106 3558783 ~ 3569352 (-)
CI01000053_03823296_03825234 NA coding upstream 123395 3823094 ~ 3825328 (-)
CI01000053_04276080_04288879 FAM101A coding upstream 576341 4276040 ~ 4288879 (-)
CI01000053_04415119_04415646 NA coding upstream 715362 4415061 ~ 4415646 (-)
CI01000053_04423076_04430502 RASSF2A coding upstream 723377 4423076 ~ 4430502 (-)
CI01000053_04450920_04470110 SLC23A2 coding upstream 751145 4450844 ~ 4470110 (-)
G227236 NA non-coding downstream 60175 3635717 ~ 3636283 (-)
G227046 NA non-coding downstream 76281 3617608 ~ 3620177 (-)
G227069 NA non-coding downstream 89969 3603898 ~ 3606489 (-)
G227047 NA non-coding downstream 149317 3484863 ~ 3547141 (-)
G227051 NA non-coding upstream 6840 3706539 ~ 3707610 (-)
G227071 NA non-coding upstream 29779 3729478 ~ 3729711 (-)
G227053 NA non-coding upstream 34425 3734124 ~ 3745623 (-)
G227563 NA non-coding upstream 264031 3963730 ~ 3965498 (-)
G227573 NA non-coding upstream 286293 3985992 ~ 3990212 (-)
CI01000053_03551506_03551965 NA other downstream 143487 3550333 ~ 3552847 (-)
G226963 NA other downstream 699190 2996717 ~ 2997268 (-)
G226826 NA other downstream 1129386 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 1459062 2225210 ~ 2226481 (-)
G225812 NA other downstream 2229726 1459595 ~ 1466732 (-)
G227604 NA other upstream 387538 4087237 ~ 4087740 (-)
G228651 NA other upstream 2084784 5784483 ~ 5787690 (-)
G228750 NA other upstream 2231893 5931592 ~ 5932241 (-)

Expression


Co-expression Network