CI01000053_05267143_05269915


Basic Information

Item Value
gene id CI01000053_05267143_05269915
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5267099 ~ 5270434 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_05267143_05269915.mRNA
CTATAAATAATCGTCAACGAACACCTGTTCATCTGGTCTTCACCATGAACACCTTTCTGTCTCTCGTGGTCCTGAGTGTGAGTCTGCCCACCTTGCTGGCTCTAGACTACCGTGCGGTGTGGCAGTTCAGGGACATGATCATCTGTACCGTCCCTGATAGCTGGCCTTTACTGGATTACGCAGACTACGGATGCTACTGCGGCCTGGGAGGCTCAGGCACCCCGGTGGATGCACTGGACAGGTGCTGTCAAGTGCATGATCAGTGCTTTTCAGACTCTAAGCAGCAAGCTGACTGCCAGGGTATCTCTGACAACCCCTACACTAAAGAATATTCATTCTCATGCAACAAATCGACAAAGAAAGTCACCTGCCATGCTGACAAGAATCGCCCCTGTGAGATGTTCATCTGTGAATGTGACAGAAAAGCAGCCGAATGCTTTGCAAAAGCGGGTTACAACCCAGAGTACAAGTACTATCCTAGTCAAAACTGCAAATGACCTGACACGTGATAAAGTTTTAAGACTGTCCATAAAGTCTCATTAAACTTAGCAATGGTATATCATGTAACCGTTTATTTTGTGTTAATTGTTATTTGATTCATAGCAGAGAGATTATTTAATGGTATGTACATTCATGCAATTAAAAATATTTACTATATTTTTCTTAATATTTTAGTCTATTTTCCAGTAAAAATGTTTAAGTTAGATTTGAAGTTTTATATATTAAGAACTGTTTTTTTTTTTAGAGGATATACGTTCATAAGAATTAAGTTTAATTTTCTTTCCATTGGCAGTTATTCTGGTTTTATGAGGTTTATCCTTAAAAAAACTAAAAAACAATTTGCCAATAGGGGAAGAAACAAACCGTATTATAAATTCTCTGAAAACAAGTCTTATGCAATTGCTTCTCAAGTAAATTTACTTTCTTTAAAAAGTTATTATTTTAAAATTATTATTTCAAAATTAAGAAAATTACTTTTGCAAGTACATTTACATGCCATTATTGACAGAATCATA

Function

NR:

description
Pla2g1b protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_05267143_05269915.mRNA True 1016 mRNA 0.37 4 5267099 5270434

Neighbor

gene id symbol gene type direction distance location
CI01000053_05253537_05256485 PLA2G1B coding upstream 10101 5253493 ~ 5256998 (+)
CI01000053_05235005_05242054 PRKAB1B, PRKAB1 coding upstream 24762 5233707 ~ 5242337 (+)
CI01000053_05214150_05219071 NA coding upstream 46769 5214150 ~ 5220330 (+)
CI01000053_05187818_05191994 NA coding upstream 74865 5187693 ~ 5192234 (+)
CI01000053_04887190_04967327 GFRA2A coding upstream 299772 4887190 ~ 4967327 (+)
CI01000053_05296599_05301528 PLA2G1B coding downstream 26121 5296555 ~ 5301735 (+)
CI01000053_05314523_05315601 NA coding downstream 44089 5314523 ~ 5316590 (+)
CI01000053_05320241_05329853 HPS4 coding downstream 49807 5320241 ~ 5329864 (+)
CI01000053_05332254_05334016 NA coding downstream 61820 5332254 ~ 5334320 (+)
CI01000053_05338500_05348218 HNF1A coding downstream 68066 5338500 ~ 5348218 (+)
G228274 NA non-coding upstream 5729 5261031 ~ 5261370 (+)
G228263 NA non-coding upstream 68531 5198356 ~ 5198568 (+)
G228243 NA non-coding upstream 110318 5156422 ~ 5156781 (+)
G227979 NA non-coding upstream 140692 5125961 ~ 5126407 (+)
G227974 NA non-coding upstream 152296 5114577 ~ 5114803 (+)
G228311 NA non-coding downstream 141525 5411959 ~ 5412340 (+)
G228309 NA non-coding downstream 142135 5412569 ~ 5413283 (+)
G228317 NA non-coding downstream 159923 5430357 ~ 5430563 (+)
CI01000053_05435608_05443587 GGT5A non-coding downstream 174040 5435479 ~ 5445226 (+)
CI01000053_05471449_05512831 LRRC75B non-coding downstream 238810 5471449 ~ 5513074 (+)
G227317 NA other upstream 851506 4414951 ~ 4415593 (+)
G226399 NA other upstream 1569570 3620798 ~ 3697529 (+)
G226347 NA other upstream 1992188 3272374 ~ 3274911 (+)
G226292 NA other upstream 2220316 3036602 ~ 3046783 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 2671632 2592558 ~ 2595467 (+)
G228257 NA other downstream 105119 5375553 ~ 5378449 (+)
CI01000053_06725452_06758944 NA other downstream 1452765 6725452 ~ 6758944 (+)

Expression


Co-expression Network