CI01000053_05435608_05443587 (GGT5A)


Basic Information

Item Value
gene id CI01000053_05435608_05443587
gene name GGT5A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5435479 ~ 5445226 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_05435608_05443587.mRNA
GTTTAAAAACCCCTGCCAAAGCTCATTTTCAGTCTTTTTTCTCCTAGAGATATACTGCAGTCGGGTGGGTCAGCGGTAGATGGCGCCATTGCTACTTTACTGTGCACGTCAATCATAAATCCCCAGAGTATGGGCATTGGTGGTGGCTCTATATTCACAATACGGGAACAAAGTGGCAAAGTGAGAATAATCAGTGCAAGAGAGACTGTCCCAAAAGCTATTAAAACAGACCTTCTTGCCACGTGCCCAACAACAATACATCCAGTGGAAGGGGCTCACTGGATCGGCGTCCCGGGTGAAATCCGTGGCTATGAGCGAGCTCATAAACTGTATGGACGTCTGCCGTGGGCCAGTTTATTTCAGCCCACTATCAAGATGGCTAGAGAGGGCGTCCCCATTCCTTATGTGCTCTCTCGATTTTTGCCGCTTCTTTTAAAGGAGAATGCAGACTCACCACTACGCAAGTTATTCCAGAATGAAAAAGGTGAGCTATTGAAAGAGGGGGACATAGTAAGATTTGAGAAACTTGCAGATACACTTGAGATCATTGCAGAACGTGGGGCGGATGCTTTTTACACTGGAGACATCGGCAAACAACTTGTCAGTGATATACAAACTGCAGGTGGAACAATTTCTCTGGAGGACTTGAGTTCGTTCAAGGCGTCTGAATCAGATGCCTGGGAAGTGAATCTAGAAGAGTATGACATGTACTTTCCTCCACCGCCAGCAGGGGGAGCTACACTAAGCTTCATACTCAACACCATGCTAGGTTTTAATCCAAGTCCTTCATCTCTGGAGGGGGATGAGAAGATCTTAACATTCCAACGTTACGTAGAAACCTGTAAATTTGCCAACGGTCTTAAGAACTTCATGAAAGATCCCAACTTTGCCTCTCAAACGGAGGCAGTTGAGATCATTCAGAAGCAGTTTGCGGACAAAGTGAGAGCAAAAATCAGCCCTGACCGCACTTATGATGCCAGCTACTACAACGTCACTCCATACCTGGACTCACATGGCACCACTCATGTGTCCGTGCTTGCTGAGGATGGGATGGCGGTATCTGTGACCAGCACCATCAACCACATGTATGTGTACTCAAATGTCATTCAGACCATTTATACAAGCTCTAGAACACAATTTGGATCCAGAATTTTCTCCTCCAAAACAGGCATCCTGCTTAACAATGAACTTGTGGACTTCTGTGGAAAAACAGACCAGATTCATGCTGGTGAGCAGCCTCCTTCCTCCATGTCTCCAGTGATCCTTTACTCCCGATCTCAGAAACACATTGTGGTCATAGGAGCCTCAGGAGGCAGTATGATCACCACCGGGGTGGCACTGACTCTCATGAACTTCCTGTGGTTTGGCAAGACGCTGCAGGATTCCATCGACGCCCCTGTGGTGTATGTTGACTCCAAAAATGTTCTTAGCTTTGAGCGCTCGTTTGATGAGATAGTTTTGGAGTCACTTAACAAGATTGGGCACAAAGTCAAAATCCCGCAGATGTTTTATAATGTGGTTAATGCAATATCAAAGGAAGACAACTGCATATTGGCCGTATCTGACTCACGAAAAAAAGGAAAAGCTGCAGGATATTGACCTGGAGTGTAGCTGGAGACTAATTCACACCAGCTCTCTCAACTCTGCTTGATGCATCTGTACAGTGTTTAGATGAAGTGCACTGGGCAGATGACAAACTGACAAATAATATCAAGCAACATCAATATGTGAAGTTTTGACATTTTACTGTGAAATTTATTTTGCACAGAACTGTCTAAAAGGGCAAATATACAATACTGTTCAAATGTTTGGGGTCTGGAGGATTTTTTTTGAAAAATTAATACTTTTATTCAGCAATGATGAATTAAAGTGATCTTAAGTGAACTTTAAACTTTATATTTATCAAAGAATCCTGAAAAATATTAAACAGCACAGCCGTTTTTAACATTAATAATAATAAGAAATGTTTTTGAGAAGCAAATCAGCATATTAGAATGATTTCTGAAGGACCGTGTGACACTGAAGACTAGAGTAATGATGCTGAAAATTCAGCTTTGACATTTCAGGAATAAATCACATTTTAAAATATATTAAATAGAAAACAGTTATTTTAAATTGTAGTAATATTTCACAATATTTCTGTTTTTACTGTATTTTTGATCAAATAAATGCAGCCTTTGTAAGCATAAAACATCTTACAGTTTTTTTTTTTTTTTTTTTTTTAAACATAAAACCCTTTTGAATGGCCCCAAACTTTTGAATGGTATAGTTTTATCACATTTTCTTCTAAAACTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTAATTACTCACCCTCATGGCGTTTCACACCCGTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTTGTTGAAATCTGATGACTCAGTGAGGCCTGCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATTTACTAAAAACATGTTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGAGACGAGAATATTTTTGGTGCGCCAAAAAAAACAAAATAATGACTTATTAGTGATAGCTGATTTCAAAACACTGCTTCATGAAGCTTCTGAGCGTTATGAATCTTTTGTGTCGAATCAGCGGTTCGTACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACCTTTATGGATCTTGAGAGAGGAAATGTCATTGCTCCCTATGCAAGCCTCACGGAGAAATCGGATTTCAACAAAAATATCTCAGTTTGCGTTCCGAAGATTAACGAAGGTCTTACGCGTGTGGAACGGCGTGAGGGTGAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAAACACTGGCAAACATTTTTCAAGTTTGTTATTTTCAGGTACAATGTCTTTCTTTCATAGTTATATATTGATAAAAGTTCCTTATTTTTATTTTGTTTATGAAGATTAAACAAATAGATACAAAGCAACATTTGTACCAACTACAACAGATTTTTTTACATGAACTAATTTGTTGAAAAATGTTAATTTTGTGAACTTTTTTCATTATACATTTCATTGCTAAAAATTTCACAACTGATCTTTGAGTAATTAAAATCTCACCTTTGTATGTCATTAGAATATCCAAAAAAATGTAACTTTAAAATACTTCAATGAAAATATTTAATATGTAAAATTTTACTGTGAAAA
>TU259084
AACATGTTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGAGACGAGAATATTTTTGGTGCGCCAAAAAAAACAAAATAATGACTTATTAGTGATAGCTGATTTCAAAACACTGCTTCATGAAGCTTCTGAGCGTTATGAATCTTTTGTGTCGAATCAGCGGTTCGTACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACCTTTATGGATCTTGAGAGAGGAAATGTCATTGCTCCCTATGCAAGCCTCACGGAGAAATCGGATTTCAACAAAAATATCTCAGTTTGCGTTCCGAAGATTAACGAAGGTCTTACGCGTGTGGAACGGCGTGAGGGTGAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAAACACTGGCAAACATTTTTCAAGTTTGTTATTTTCAGGTACAATGTCTTTCTTTCATAGTTATATATTGATAAAAGTTCCTTATTTTTATTTTGTTTATGAAGATTAAACAAATAGATACAAAGCAACATTTGTACCAACTACAACAGATTTTTTTACATGAACTAATTTGTTGAAAAATGTTAATTTTGTGAACTTTTTTCATTATACATTTCATTGCTAAAAATTTCACAACTGATCTTTGAGTAATTAAAATCTCACCTTTGTATGTCATTAGAATATCC
>TU259085
AACATGTTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGAGACGAGAATATTTTTGGTGCGCCAAAAAAAACAAAATAATGACTTATTAGTGATAGCTGATTTCAAAACACTGCTTCATGAAGCTTCTGAGCGTTATGAATCTTTTGTGTCGAATCAGCGGTTCGTACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACCTTTATGGATCTTGAGAGAGGAAATGT

Function

symbol description
ggt5a Predicted to enable glutathione hydrolase activity and peptidyltransferase activity. Predicted to be involved in several processes, including peptide metabolic process; response to estradiol; and response to tumor necrosis factor. Predicted to be active in plasma membrane. Orthologous to human GGT5 (gamma-glutamyltransferase 5).

GO:

id name namespace
GO:0003840 obsolete gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K18592 GGT1_5, CD224; gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_05435608_05443587.mRNA False 3238 mRNA 0.38 11 5435479 5445226
TU259084 False 689 lncRNA 0.31 1 5444474 5445162
TU259085 True 249 lncRNA 0.33 1 5444474 5444722

Neighbor

gene id symbol gene type direction distance location
CI01000053_05362044_05364177 PBLD2, PBLD coding upstream 69782 5360922 ~ 5365697 (+)
CI01000053_05338500_05348218 HNF1A coding upstream 87261 5338500 ~ 5348218 (+)
CI01000053_05332254_05334016 NA coding upstream 101159 5332254 ~ 5334320 (+)
CI01000053_05320241_05329853 HPS4 coding upstream 105615 5320241 ~ 5329864 (+)
CI01000053_05314523_05315601 NA coding upstream 118889 5314523 ~ 5316590 (+)
CI01000053_05471449_05512831 LRRC75B coding downstream 26223 5471449 ~ 5513074 (+)
CI01000053_05526931_05550454 NA coding downstream 81403 5526629 ~ 5550472 (+)
CI01000053_05563771_05573792 RNF34, RNF34A coding downstream 118545 5563771 ~ 5573965 (+)
CI01000053_05589379_05590208 NA coding downstream 143666 5588892 ~ 5591102 (+)
CI01000053_05593016_05597420 ORAI1, ORAI1A coding downstream 147790 5593016 ~ 5597488 (+)
G228317 NA non-coding upstream 4916 5430357 ~ 5430563 (+)
G228309 NA non-coding upstream 22196 5412569 ~ 5413283 (+)
G228311 NA non-coding upstream 23139 5411959 ~ 5412340 (+)
G228274 NA non-coding upstream 174109 5261031 ~ 5261370 (+)
G228263 NA non-coding upstream 236911 5198356 ~ 5198568 (+)
G228334 NA non-coding downstream 78354 5523580 ~ 5524211 (+)
G228374 NA non-coding downstream 97032 5542258 ~ 5542539 (+)
G228337 NA non-coding downstream 106773 5551999 ~ 5552423 (+)
G228392 NA non-coding downstream 159557 5604783 ~ 5605652 (+)
G228257 NA other upstream 57030 5375553 ~ 5378449 (+)
G227317 NA other upstream 1019886 4414951 ~ 4415593 (+)
G226399 NA other upstream 1737950 3620798 ~ 3697529 (+)
G226347 NA other upstream 2160568 3272374 ~ 3274911 (+)
G226292 NA other upstream 2388696 3036602 ~ 3046783 (+)
CI01000053_06725452_06758944 NA other downstream 1277973 6725452 ~ 6758944 (+)

Expression


Co-expression Network