CI01000053_06287804_06296687


Basic Information

Item Value
gene id CI01000053_06287804_06296687
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 6287214 ~ 6296687 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_06287804_06296687.mRNA
AAGGCCACCGGGCAGTGGGCTCTCTAAAGAGACCAACACGTCAGGGAAACTGGAGCCGGTCCCTGCCGAGGGACAAACAGTGACCGGGTCTCAGCGATCGTCCCAACCTGACACTTGTCATACTGATCAACCTGGAATTGAAAGACTGAAAAAAGGCAAAATAATGGAAAAGAGACGGAAACAACCAAACAAGGCAACCAGTCCATTCACTTATGATTTACCTCACAGCAAAAGGGAACGTCTAGCCAAACTCATTGGAAGGAGAGCTCTCACCCATTGTAACCTAAATGGATTAGCAGTCAGTGCTCTGCCAGACACTGGGGTTCAAGTCAGTATGATTGATAGAGACTGGAATAGTAAATATCTACCTGACACTCCTGTTAGGCCACTCAGTGACATTATAGGTGACAAAGACGAGTTAAGGGTGTATGCAGCGAACGGTGATGTCCTCCCGTTTGATGGCTGGGTTGCCCTTAAAGTCAATTTGATGGGGAATGAGGACCCTAATCTGTCAATCACTGTGCCTTTTCTTGTCAGCAGTCTTGCTCTGGAGAGACCACTGTTGGGTTTCAACGTGTTGGAAGAGATGATACAAGAACAACCTGAAAAGCTGATTTCAACCCTCGTCGTCCTACTCTGTAATGCCTTGTGTATACCAGCAGAGAAGGCAGAGCTAATGGTGAGCTTCATCCAAGCCAGCAAACCCTCTGTGCAGTGCGGGCGCCTACGGAGGGGCAGACAGGACATGGTTATCCCAGCAGGTCAGGTAGCCTGGGTCAAGTGCCAAGTTCCTCCCCACATGAGTACATCTGACGCAGTCTTCCTATTTGAGCCTGATGACAACAATGTGCAGTTGACAGAACTGGACGTGGGTGAAGACTCACCTGAAGCACCCGAGCCCACAGTGACTGTTAACAGTGCGGTATCAACACCTGTTGACGCCCGTCCATCGTCATGGCAACCTCCCATCGACCTCAGTCACCCTGATGATAAACAAAGAGAAAAAGTCAACAAAATTCTGTGTGAAGAAGCCGGGGCTTTCGCACGTGACAGCGATGATATTGGATGCATACCAAGCTTACAAATGTCGATTACCCTCACAGATGAAATCCCTGTACAGAGAGCATACTCAGCAGTCCCGAAGCCACTGTTTAAAGAGAATACAAGACCTGACATCCTGGACCAGGGAAAAGCTTACCATCAGGGTTTCATCGCCGAGGGTTCACGTCACCTGACTGCCTTCGTCACTCCGTGGGGCCTCTATGAATGGGTCCGTATCCCATTCGGACTCTCAAATGCCCCAGCAGCATTTCAGCAGAGCATGGAGGAGGTGCTAGGCACCCTCAGGGATGAATGCTGCATCCCTTATCTGGATGACGTGCTCTGTTACGCGAGAACATTCGATGAACATGTGGAGGCCCTCCGCAAAGTGCTCCAGGCTCTTCAACAGCACGGAGTAAAAGTGAGACCTGAGAAGTGTGAGCTCTTCAGACAAGAAGTCAGGTACGTGGGGCGCCTTGTGTCAGCTGATGGTGTCAAGATAGACCCACGGGACCTTGAAGCAGTCAAAACCTTGACAAGCAAGACACCACAGACAGTTGGTGAAGTAAGGAAACTGACCGGCTTCTTGGGATATTATCGCTCCTACATCCAGGATTTTTCCAGGATCGCAAAGCCAATCTATGAGCTTCCCCAAACTAAGTCAGGGAAAGCCCAGATTCCAACATGTGGGAAAACCACCAAATGCCCACTGCTGCCTTCCCGACAGCCTGTTGACTGGACCACTCAACATCAGGAAGCTTTAGAGCAACTGGTCACTCTCCTTATAACCCCACCTGTCTTAGCGTATCCTGATTTCAACCTACTTTTCACGCTGCATACAGACACCTCAGACCGGGGCCTGGGGGCAGTCCTCTATCAGCGCCAGAATGGAAAGCTGAGAGTCATTGGCTATGGCTCGAGGACTTTGACACCTGCTGAACTTCCGGGACTACCTTACTACGCTCCCCATTTCACTGTGTACACGGACAACAACCCCCTGACCTACATCATGAGTACAGCAAAACTCGCTGTTGGTCATCGGTGGGTGGGAGAACTCTCAGATTTCCAGTTCGACATCAGGTATAGGCCTGGAAAATCAAATGTGGATGCAGACACACTGTCTCGGCTCCCCTTGGACATGGGGAAATATGAGGTGGCTTGTACAGAGGAGTTCTCGAACGAGGCAGTGCGTGCTACGTGGGATGGGAGTCAAGCAGCAGAACGGAAGGATGTGGCCTGGGTTGCAGCACTTAACATGTGTTCCCCGGATCCTCCACCACAACCTCTTTGTCACCTGCCAGCTATCAGCGATGATGATCTTGTTAAGGCTCAAAGAGAGGATCAAGCCATAGGCAAGATTGAGTTAAAGGAGTCAAACACAAAACTGACAGATGACATACGCCAAACTGTAAGTGGAGCCATCCGAAAGCTGCTGCATGAGTGGAGTAAGTTGCCGATTGCTCTGAAGTACCTACACAATGAGATGGGTCATGTAGGCACAGAAAGAGTGCTCCATCTTGCTCGGGAAAGATTTTACTGGCCCTTTATGGCTAAAGAAATTGAAGACTATGTCACCCGAAAATGTCTCTGTATCAGGTCTAAGAAACCCACGACACACACGAGAGCTCCTATGGGCAGCATCACATCTAACTTCCCTTTAGAGCTTGTGTGTATTGACTATTTGTATCTGGAAACCAGTTGTGGGGGATATGAATATATTCTAGTAGTGCTTGATCATTTCACTAGATTTGCCCAGGCATATCCCACGAAGAACAAGAGCGGGAAAACAGCTGCTGAGCGCATCTTCAGTGATTTCATACCCCGGTTCGGATATCCATCCAAGCCACATCATGACCAGGGTCGTGAATTTGAGAACAAACTGTTCCAATCATTACAGCGGTTGTCAGGGATGTTAAGAACATTGACTGATAGTGAGAAACTACGGTGGAAGGATCACCTCCCGCATGTTATACACGCATACAATTGCACCAGACATGAGTCAACTGGCTACTCACCGTTTTTTCTCCTTTACGGCCGTCACCCACATCTCCCAGTCGACTTGCTGTTTGGATTGGTTGGAGAAAGGGAACCATACTTACCTAGAGGATTTGCAGAGAAATGGGCTAAAAAGATGTCAGAAGCCTACCGCATTGGTGGCGAGAATAGCAAAAAGTCCAGTGCAAGGGGAAAAGTGACATATGACAAGAAAGCAAGAGGGGTTGTACTGCAACCAGGGGACAGAGTTCTGGTCCGGAACCTCAGTGAATGGGGAGGGCCGGGAAAATTAAGGGCATACTGGGAGAAGACTATATACATGGTCGAACGTCAACTTGCTGAGAACCCAGTGTACGTTGTCTGCCCTGAAACTGGAGAAAAACAGAAAAGCAGGACACTGCACCGTAATCTCCTGTTGCTGGTGAACGACTTACCTGTCGATGTCACTCCACCTGACACCAGATCTATTCCTGAGAAGAAAACACATAACAGACAAAACCAAGAGAGAATGACAGACACTCAAAGACAAGCAGACACGAGTGATGACAGTGAAAATGATTCAGATGATGATTCTGGCTCGGGATACTGGTTAAGGAGACCGACCGAAAGGATAGAGGAAAGACCTGTTACCTACCAGGAGCAACTCACCAGGTATCCAGAGATTACAGTCATACTGTACCTGAACACTTACCAAATCTGACTGAGAAGAGACACCATGCTGATGAAAACCTACCTTTACTCACTGGACCTGTGGAAGGGGAGGAAAACAATGGACACCAAGACTCTGACTCAGAAGCTCGACCTTTGACCCCCCCTGTAGAGTACACTCAGTTAGACGTTAGAAGGTCCGTTCGTGAGAAAAGGCCACGCCGTTTTCTCACATATGAGTCATTAGGAGAGCCATCAGTCCAGACGCACGCCACAGTTAACTCAGTGACCGGATACACAGCACCCTACATACCTGTCATAGAAGCATCTCATCACACTACACCTGCACACTCACTCTTTCCATACATCCCGCCTCTTTGTATGCCATATTCACACCCACTCCTTTACTCCCAGACACCATACATGCCATACCCTTACCAAGCACCAGCCACATACATTCCACCTACCATGCTTGTTTGTTGAATAGAGATTTGAGAATCAAGGTTAAGAATTGGAAAAGTTAAACGGTTTTGAGATAAAGATTTTTGGAAATGTCGGGAGCCATTCTTCTCTGTCAGGGAGCGTGTGATGCCCACTAAAGTGTTATCACATTTGTGGTAGTTTCTGTAATTTTATAATTAA

Function

NR:

description
pol polyprotein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_06287804_06296687.mRNA True 4326 mRNA 0.48 6 6287214 6296687

Neighbor

gene id symbol gene type direction distance location
CI01000053_06162569_06179766 GOLGA1 coding downstream 107112 6162079 ~ 6180102 (-)
CI01000053_06060129_06071679 RNF10 coding downstream 215535 6059609 ~ 6071679 (-)
CI01000053_06038638_06043939 FAHD2B, FAHD2A coding downstream 243275 6038336 ~ 6043939 (-)
CI01000053_05732296_05750809 NPC1L1 coding downstream 536405 5731378 ~ 5750809 (-)
CI01000053_05692640_05695728 MYL7, MYLC2A, MYL7.L coding downstream 591486 5692635 ~ 5695728 (-)
CI01000053_06308157_06310323 NA coding upstream 10915 6307318 ~ 6310466 (-)
CI01000053_06662264_06720098 SLC15A4 coding upstream 364899 6661586 ~ 6720662 (-)
CI01000053_06768909_06775364 NA coding upstream 471285 6767972 ~ 6776006 (-)
CI01000053_06777287_06806952 NA coding upstream 480555 6777242 ~ 6806952 (-)
CI01000053_06829449_06831635 NA coding upstream 532086 6828773 ~ 6831635 (-)
G229236 NA non-coding downstream 52420 6234514 ~ 6234794 (-)
G229235 NA non-coding downstream 54053 6232905 ~ 6233161 (-)
G229227 NA non-coding downstream 63985 6222660 ~ 6223229 (-)
G229207 NA non-coding downstream 65990 6192641 ~ 6221224 (-)
G229212 NA non-coding downstream 133451 6152790 ~ 6153763 (-)
G229423 NA non-coding upstream 426537 6723224 ~ 6724500 (-)
G229459 NA non-coding upstream 468943 6765630 ~ 6766857 (-)
G229464 NA non-coding upstream 477660 6774347 ~ 6774826 (-)
G229465 NA non-coding upstream 478143 6774830 ~ 6775086 (-)
G228750 NA other downstream 354973 5931592 ~ 5932241 (-)
G228651 NA other downstream 499524 5784483 ~ 5787690 (-)
G227604 NA other downstream 2199474 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 2734243 3550333 ~ 3552847 (-)
G226963 NA other downstream 3289946 2996717 ~ 2997268 (-)

Expression


Co-expression Network