XLOC_009812 (cd27)


Basic Information

Item Value
gene id XLOC_009812
gene name cd27
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17089114 ~ 17101441 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019605
CACGAGCATGAGTAAGGGGGGAGAAAGCAGACTATTATAAGACAGGCTTTTTGAAGATAACCCCAAATTAGAAATAATCGAAGCTTGTAGATTGAATTGACTTGATGCTGACTGGACGTGGTTTTTATGAATCTGAACTGAAGCCACTTTGTGGATTCTGTGCAATCGGTCGTTATTTTACCACTGACCTTGCTACTAATTTCTTGTCTTAAAATGAGTGGATGTTGAAgagttaatcttttttttactcATGTCTTTAGTCATTGCGAGACCCTTTTCATCTATAATGTTTGTGcgcatatatgtattattttttcagagaaatggagagaaagaaagaatttGTTTTGGAACTTATCTACAATAAGACAGGAAACCTTGAATGGAACATTTTGGGGTAGGGGAAAaagagatggaggagagactgAGAGCAAGGCTGCTGCAGTTTAGGGTCTTACAGGTGGAGTCATCCATACCGTTAGTTCAATGGTAGTTTATGTATGACTCATCTGGCATTTCTTTAATGCTGAACTGTTGTCCCCCTCATCTTCAAACCTTTAGAGGGGCCGACTAGCTCACATCTCTCTTCTTCTCTCCCATCTTCAACACAATTTCAAGATGCTTACACTGCTCTGTATTGTCCTGCTCACATCACATGTCCTTTCTGCCGACCAATCGTTGAAGTGCAACGAAAGAACCGAGTATGCTGAGAATCAGCAGTGCTGCAAAAAATGTAAACCAGgacAGTTCATGGATGAGAAATGTGGAACAAGCTCACGAGATACCCAGTGCAAGCCGTGCGGAAATGGCTTCTTtacaaatgaatataatattaaatataaatattgctCTCCTTGCACAAAATGCACCAAAGAACatatgaGGTATAAGAGGACCTGTACGACAACAGGTGATGCTGAGTGTACATGTGAGGATGGTTATAAATGCAGTAGCAACAAATGCGAGAAATGTGAGAAAGTCCTGAAAACTACTCCTCCTACTAAAATACCACCGGTCACCAATGTTATGCCATTTGACAACCGTCTGACAACTGGTTACAATTGCCATGACAGCAAATGCAGGATGAGATTCCAGAAAACTACGACTTCTCCACCGGCCACCAATGATAATGTGTGGATCTCGGTGAGTCTGTGTttagcgtgtgtgtgtctgtgctttcTGTTCCTCTGTCTCCTTCTCACCAGCAGACATGCACAACCATGTGGATGGATCATGTCAGCATCAACCGGTTTCTGGTACTATACGAAGAGCAACTCTTTATCCAGTCAGTGCACAGAGGAAGAAAAGGTCCCAATGCCAGTGCAGGAGATGTGTGGGAAGACCGAGAAACTGGAGGATGTCTGAGAGAGGAGAAAGAAGACCACTGGTGCGTCTGAGTATTGAGTATTTACTCTAGTACAAACCTGCTGCTGCCATTTACTCTGCACTGAGGTGGATCATCCAGATTGTTACGAGAGAACAGAATGACGGTCCATCCTGAGAAATGCTGAGACGGAGAGAGATTTGAGCTCCCACTTCACATAAAGACAAACACAACTTTTCACATACAGCTCATTTTCTTATAACAAATGTGTTTTCTTTTCTGTGCACTTGTTTGTATTTATAACTGGGGTGTTTGCGCACAATGTGCCCCTGGACTTTTTTAAGATCAAGATTTTTCATTCAAATGTACATTTGAAGAATTGTTAAcctctctgaattattagcccaatgGTTTG

Function

symbol description
cd27 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in negative regulation of apoptotic process. Predicted to act upstream of or within apoptotic process; immune response; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in lymphoproliferative syndrome 2. Orthologous to human CD27 (CD27 molecule).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006955 immune response biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0007165 signal transduction biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04050 Cytokine receptors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-160113-60 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in negative regulation of apoptotic process. Predicted to act upstream of or within apoptotic process; immune response; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in lymphoproliferative syndrome 2. Orthologous to human CD27 (CD27 molecule).

Ensembl:

ensembl_id ENSDARG00000105423

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019605 True 1739 mRNA 0.42 7 17089114 17101441

Neighbor

gene id symbol gene type direction distance location
XLOC_009811 NA coding upstream 84739 17004014 ~ 17004375 (+)
XLOC_009810 si:ch211-120k19.1 coding upstream 97306 16968682 ~ 16991808 (+)
XLOC_009809 myh14 coding upstream 143464 16849220 ~ 16945650 (+)
XLOC_009808 kcnj14 coding upstream 249617 16824678 ~ 16839497 (+)
XLOC_009807 NA coding upstream 374696 16708151 ~ 16714418 (+)
XLOC_009813 gtf3c6 coding downstream 151046 17252487 ~ 17253389 (+)
XLOC_009814 NA coding downstream 198712 17300153 ~ 17302519 (+)
XLOC_009815 fam131bb coding downstream 287675 17389116 ~ 17467462 (+)
XLOC_009816 CR855317.1 coding downstream 415507 17516948 ~ 17517082 (+)
XLOC_009817 NA coding downstream 447350 17548791 ~ 17551059 (+)
XLOC_009806 NA non-coding upstream 440239 16644679 ~ 16648875 (+)
XLOC_009803 BX248082.1 non-coding upstream 934656 16154324 ~ 16154458 (+)
XLOC_009802 BX248082.2 non-coding upstream 1029306 16055484 ~ 16059808 (+)
XLOC_009818 FP015958.1 non-coding downstream 469369 17570810 ~ 17570934 (+)
XLOC_009819 NA non-coding downstream 499436 17600877 ~ 17601900 (+)

Expression


Co-expression Network