XLOC_009813 (gtf3c6)


Basic Information

Item Value
gene id XLOC_009813
gene name gtf3c6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17252487 ~ 17253389 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019606
GTAAACGAATCAGACCCCCCAGTTAACTACTTCCGTCGCGTACATTATGCGAAACAATTCGTCGCTAACTTAGATGTTAAGCGTTTCAATACACGAGTTGCATCTTCGTCTCATCGTATAGATAAACAAATAGTCTTTTTAGCCATGGAAGACGAGTGGGAAGAGGAAGAGCAGATGGTTGTGGCTGAACTGTCAGGAATGATCAACTCTGACTTAATCTCCAATCGGCAAGGCACCTGCAAGATAGTGGACATCGACAGCGAGCAGCCCATGCTGCAAGTCGGCCGGTATCTGTTCACCGGTGAGTACGAGGACGCTATCGGGACATGCGTGATCTTTGAGGAGGACAGGTCATCTTCTAATGCAGCACTTAAATACAAATGTCACACAATGAAGAAACTGATGCTGCAGCGAACGTTTCTGTCAGAGAGGAAAGAAGACGAGCCCGTCTCCAACCGCATAGAGGTGCTGGCTCTCAACGAAGAAGAGTCGTTCGGTCGGAAGAGCGTTTGTCACTACCTGGACCCCATAGAGACGGACAAATCTGTCCTTGACGAATCTAAAGACTGTGAGGACCCAGAGAAGAGCGGTGGATCAGCAGATGAAATGGACGAGACGCTTCTGGAAAACGAGACGATGAACGCCAGCAACTCTCTTTTACCGGAGTCTGTGCAAGAAGAGGACGAGAGCCCCTGAAATACTTTTACTAATGTACATTctgtataatgtaaatataagCTTTTTTGGTTAAAGTTTTGTCCTTTGCTGACATGAATGAACGTCTGTCTTATTTTGTCTGTTTTACCCATAGTTTTACCATGCACTAAGCGCCAAAACATGTCTTTATGGTTGGAATGGATATTgtaaaagaaacagaaaaaaacatcaagcAAAACAATAACA

Function

symbol description
gtf3c6 Predicted to be involved in transcription by RNA polymerase III. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C6 (general transcription factor IIIC subunit 6).

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0000127 transcription factor TFIIIC complex cellular_component

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040426-1009 Predicted to be involved in transcription by RNA polymerase III. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C6 (general transcription factor IIIC subunit 6).

Ensembl:

ensembl_id ENSDARG00000043301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019606 True 903 mRNA 0.45 1 17252487 17253389

Neighbor

gene id symbol gene type direction distance location
XLOC_009812 cd27 coding upstream 151046 17089114 ~ 17101441 (+)
XLOC_009811 NA coding upstream 248112 17004014 ~ 17004375 (+)
XLOC_009810 si:ch211-120k19.1 coding upstream 260679 16968682 ~ 16991808 (+)
XLOC_009809 myh14 coding upstream 306837 16849220 ~ 16945650 (+)
XLOC_009808 kcnj14 coding upstream 412990 16824678 ~ 16839497 (+)
XLOC_009814 NA coding downstream 46764 17300153 ~ 17302519 (+)
XLOC_009815 fam131bb coding downstream 135727 17389116 ~ 17467462 (+)
XLOC_009816 CR855317.1 coding downstream 263559 17516948 ~ 17517082 (+)
XLOC_009817 NA coding downstream 295402 17548791 ~ 17551059 (+)
XLOC_009818 FP015958.1 coding downstream 317421 17570810 ~ 17570934 (+)
XLOC_009807 NA non-coding upstream 538069 16708151 ~ 16714418 (+)
XLOC_009806 NA non-coding upstream 603612 16644679 ~ 16648875 (+)
XLOC_009803 BX248082.1 non-coding upstream 1098029 16154324 ~ 16154458 (+)
XLOC_009802 BX248082.2 non-coding upstream 1192679 16055484 ~ 16059808 (+)
XLOC_009819 NA non-coding downstream 347488 17600877 ~ 17601900 (+)

Expression


Co-expression Network