G225433


Basic Information

Item Value
gene id G225433
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 368985 ~ 382909 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU255730
CTGGTTGCTTGGCTGTTCAGGGTTGTCTTTCCCCACCTGACCGTACTTGGCTCCAGTTCAAAAACTCTGCAATATGTGTGTGTGTCCTTGTAAGGGCCCCGACTAGACAAGAATCAACAAGCTTAACAGAGAGCAGCGTCGGACATGAGGCATTTACTGAGTCTTCCACGTCTAGCCTCCCGGGCGTTTAGCACAACAGTCCGGCAAATGAAAAACAAGGTGCCGGATAGACAGAAGGTTTTCCTGGAGGATAACGGTCTGCCTGTCCACATTAAAGGAGGCACTACCGACGTCCTTCTGTACCGGTTGACCATGACCATCACATTAGCAGGCACTGCCTTTTCCTGTTACTGGTTGCTGTTGGCCTCTATGCCCAAGAGTAAAGCATAAGAACTTTAAAGCTGCATGATGCTGTACAAATCCATTTCATTTCAAATACCTTGAACAATAAAACACATATATAAAAGATGAATGTATTAAATCCTACAAATGGGTCTCTATCATTGAGTGGTGTTTGGTCACTACAATACACAGTACCGT
>TU255731
TGACCGTACTTGGCTCCAGTTCAAAAACTCTGCAATATGTGTGTGTGTCCTTGTAAGGGCCCCGACTAGACAAGAATCAACAAGCTTAACAGAGAGCAGCGTCGGACATGAGGCATTTACTGAGTCTTCCACGTCTAGCCTCCCGGGCGTTTAGCACAACAGTCCGGCAAATGAAAAACAAGGTGCCGGATAGACAGAAGGTTTTCCTGGAGGATAACGGTCTGCCTGTCCACATTAAAGGAGGCACTACCGACGTCCTTCTGTACCGGTTGACCATGACCATCACATTAGCAGGCACTGCCTTTTCCTGTTACTGGTTGCTGTTGGCCTCTATGCCCAAGAGTAAAGCATAAGAACTTTAAAGCTGCATGATGCTGTACAAATCCATTTCATTTCAAATACCTTGAACAATAAAACACATATATAAAAGATGAATGTATTAAATCCTACAAATGGGTCTCTATCATTGAGTGGTGTTTGGTCACTACAATACACAGTACCGT
>TU255733
TGACCGTACTTGGCTCCAGTTCAAAAACTCTGCAATATGTGTGTGTGTCCTTGTAAGGGCCCCGACTAGACAAGAATCAACAAGCTTAACAGAGAGCAGCGTCGGACATGAGGCATTTACTGAGTCTTCCACGTCTAGCCTCCCGGGCGTTTAGCACAACAGTCCGGCAAATGAAAAACAAGGTGCCGGATAGACAGAAGGTTTTCCTGGAGGATAACGGTCTGCCTGTCCACATTAAAGGAGGCACTACCGACGTCCTTCTGTACCGGTTGACCATGACCATCACATTAGCAGGCACTGCCTTTTCCTGTTACTGGTTGCTGTTGGCCTCTATGCCCAAGAGTAAAGCATAAGAACTTTAAAGCTGCATGATGCTGTACAAATCCATTTCATTTCAAATACCTTGAACAATAAAACACATATATAAAAGATGAATGTATTAAATCCTACAAATGGGTCTCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCC
>TU255732
TGACCGTACTTGGCTCCAGTTCAAAAACTCTGCAATATGTGTGTGTGTCCTTGTAAGGGCCCCGACTAGACAAGAATCAACAAGCTTAACAGAGAGCAGCGTCGGACATGAGGCATTTACTGAGTCTTCCACGTCTAGCCTCCCGGGCGTTTAGCACAACAGTCCGGCAAATGAAAAACAAGGTGCCGGATAGACAGAAGGTTTTCCTGGAGGATAACGGTCTGCCTGTCCACATTAAAGGAGGCACTACCGACGTCCTTCTGTACCGGTTGACCATGACCATCACATTAGCAGGCACTGCCTTTTCCTGTTACTGGTTGCTGTTGGCCTCTATGCCCAAGAGTAAAGCATAAGAACTTTAAAGCTGCATGATGCTGTACAAATCCATTTCATTTCAAATACCTTGAACAATAAAACACATATATAAAAGATGAATGTATTAAATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU255730 False 159 lncRNA 0.45 1 382751 382909
TU255731 True 122 lncRNA 0.45 1 382751 382872
TU255733 False 161 lncRNA 0.42 2 368985 382872
TU255732 True 161 lncRNA 0.42 2 368985 382872

Expression


Co-expression Network