Gene
RNA
| Item | Value |
|---|---|
| gene id | G225690 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 938585 ~ 938904 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU256015 | True | 320 | lncRNA | 0.48 | 1 | 938585 | 938904 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000053_00865420_00881846 | ROBO3, ROBO2 | coding | downstream | 56739 | 865373 ~ 881846 (-) |
| CI01000053_00830433_00864331 | NA | coding | downstream | 74212 | 830198 ~ 864373 (-) |
| CI01000053_00815725_00817893 | LIM2.1, LIM2.3 | coding | downstream | 120692 | 815597 ~ 817893 (-) |
| CI01000053_00797990_00802827 | NA | coding | downstream | 135525 | 797707 ~ 803060 (-) |
| CI01000053_00739813_00746803 | NA | coding | downstream | 191554 | 739662 ~ 747031 (-) |
| CI01000053_00956174_00961278 | ACAD8 | coding | upstream | 17105 | 956009 ~ 961278 (-) |
| CI01000053_00968102_00970741 | VPS26BL, V26BL, V26BB, VPS26B | coding | upstream | 29139 | 968043 ~ 971775 (-) |
| CI01000053_00974193_00978185 | JAM3A | coding | upstream | 34357 | 973261 ~ 978185 (-) |
| CI01000053_01063383_01064712 | NA | coding | upstream | 124325 | 1061690 ~ 1066035 (-) |
| CI01000053_01124489_01129327 | NA | coding | upstream | 184855 | 1123759 ~ 1129359 (-) |
| G225687 | NA | non-coding | downstream | 31584 | 906560 ~ 907001 (-) |
| G225678 | NA | non-coding | downstream | 121917 | 816404 ~ 816668 (-) |
| G225561 | NA | non-coding | downstream | 124345 | 813628 ~ 814240 (-) |
| G225563 | NA | non-coding | downstream | 128851 | 808167 ~ 809734 (-) |
| G225668 | NA | non-coding | downstream | 189090 | 749251 ~ 749495 (-) |
| G225691 | NA | non-coding | upstream | 92 | 938996 ~ 939349 (-) |
| G225692 | NA | non-coding | upstream | 1677 | 940581 ~ 940782 (-) |
| G225577 | NA | non-coding | upstream | 15899 | 954803 ~ 955238 (-) |
| G225581 | NA | non-coding | upstream | 16486 | 955390 ~ 955663 (-) |
| G225698 | NA | non-coding | upstream | 20686 | 959590 ~ 1066551 (-) |
| G225574 | NA | other | downstream | 391717 | 543647 ~ 546868 (-) |
| G225812 | NA | other | upstream | 520691 | 1459595 ~ 1466732 (-) |
| CI01000053_02225226_02226481 | YPELD, YPEL2B, YPEL1, YPELC, YPEL2 | other | upstream | 1278544 | 2225210 ~ 2226481 (-) |
| G226826 | NA | other | upstream | 1626988 | 2565892 ~ 2567072 (-) |
| G226963 | NA | other | upstream | 2057813 | 2996717 ~ 2997268 (-) |
| CI01000053_03551506_03551965 | NA | other | upstream | 2611429 | 3550333 ~ 3552847 (-) |
