Gene
RNA
| Item | Value |
|---|---|
| gene id | G225692 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 940581 ~ 940782 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU256017 | True | 202 | lncRNA | 0.45 | 1 | 940581 | 940782 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000053_00865420_00881846 | ROBO3, ROBO2 | coding | downstream | 58735 | 865373 ~ 881846 (-) |
| CI01000053_00830433_00864331 | NA | coding | downstream | 76208 | 830198 ~ 864373 (-) |
| CI01000053_00815725_00817893 | LIM2.1, LIM2.3 | coding | downstream | 122688 | 815597 ~ 817893 (-) |
| CI01000053_00797990_00802827 | NA | coding | downstream | 137521 | 797707 ~ 803060 (-) |
| CI01000053_00739813_00746803 | NA | coding | downstream | 193550 | 739662 ~ 747031 (-) |
| CI01000053_00956174_00961278 | ACAD8 | coding | upstream | 15227 | 956009 ~ 961278 (-) |
| CI01000053_00968102_00970741 | VPS26BL, V26BL, V26BB, VPS26B | coding | upstream | 27261 | 968043 ~ 971775 (-) |
| CI01000053_00974193_00978185 | JAM3A | coding | upstream | 32479 | 973261 ~ 978185 (-) |
| CI01000053_01063383_01064712 | NA | coding | upstream | 122447 | 1061690 ~ 1066035 (-) |
| CI01000053_01124489_01129327 | NA | coding | upstream | 182977 | 1123759 ~ 1129359 (-) |
| G225691 | NA | non-coding | downstream | 1232 | 938996 ~ 939349 (-) |
| G225690 | NA | non-coding | downstream | 1677 | 938585 ~ 938904 (-) |
| G225687 | NA | non-coding | downstream | 33580 | 906560 ~ 907001 (-) |
| G225678 | NA | non-coding | downstream | 123913 | 816404 ~ 816668 (-) |
| G225561 | NA | non-coding | downstream | 126341 | 813628 ~ 814240 (-) |
| G225577 | NA | non-coding | upstream | 14021 | 954803 ~ 955238 (-) |
| G225581 | NA | non-coding | upstream | 14608 | 955390 ~ 955663 (-) |
| G225698 | NA | non-coding | upstream | 18808 | 959590 ~ 1066551 (-) |
| G225715 | NA | non-coding | upstream | 87467 | 1028249 ~ 1037770 (-) |
| G225574 | NA | other | downstream | 393713 | 543647 ~ 546868 (-) |
| G225812 | NA | other | upstream | 518813 | 1459595 ~ 1466732 (-) |
| CI01000053_02225226_02226481 | YPELD, YPEL2B, YPEL1, YPELC, YPEL2 | other | upstream | 1276666 | 2225210 ~ 2226481 (-) |
| G226826 | NA | other | upstream | 1625110 | 2565892 ~ 2567072 (-) |
| G226963 | NA | other | upstream | 2055935 | 2996717 ~ 2997268 (-) |
| CI01000053_03551506_03551965 | NA | other | upstream | 2609551 | 3550333 ~ 3552847 (-) |
