XLOC_009820


Basic Information

Item Value
gene id XLOC_009820
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17665762 ~ 17666931 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021701
GAATTGTTCAACTGTTTTCATAGACTGTGGGTGTTTCAATGGGGCAGCGGAGAGTGCTCCAAAAAAGGTATAAGCTAACAAAGAGATGCTATAGCGGAATGTCAACTCAATGTGCAAAATGTTCAGAAGGGACATACCAAGACAAAATGAACTATTTCCCAAACTGCTTCAGATGCCAGGAATGTACTAAGAGAAGTCATGCAGTGATGATTTCGCCGTGTACGTACCAAAGTAACACTGTTTGTGGATGTCAATCAGGATACCGCAAAAAAATGTTTGACAGTATTTCATGGGCTTGTGAGCCCTTTAAAAAGAGTGATTACGTATAACTTAAAACAAGAGGAGAGAAATATCATCCAGGCTTCGTGAGACGGAAGTAAACATGTCTATCTCCATCCATGGTTCGggccttaataaaaaaaaagtttgggc
>TCONS_00021702
GACTGTGGGTGTTTCAATGGGGCAGCGGAGAGTGCTCCAAAAAAGTGAGTGTTTAAAAAGTGAATACTGGACTGAGGGGCTTTGTTGTCACAAATGTCCTGAAGGGTATAAGCTAACAAAGAGATGCTATAGCGGAATGTCAACTCAATGTGCAAAATGTTCAGAAGGGACATACCAAGACAAAATGAACTATTTCCCAAACTGCTTCAGATGCCAGGAATGTACTAAGAGAAGTCATGCAGTGATGATTTCGCCGTGTACGTACCAAAGTAACACTGTTTGTGGATGTCAATCAGGATACCGCAAAAAAATGTTTGACAGTATTTCATGGGCTTGTGAGCCCTTTAAAAAGAGTGATTACGTATAACTTAAAACAAGAGGAGAGAAATATCATCCAGGCTTCGTGAGACGGAAGTAAACATGTCTATCTCCATCCATGGTTCGggccttaataaaaaaaaagtttgggcaccctctcTTTTTTGTGGATTTTGAAACCTGTAGTCACTTAACACTAATTGTttacaacacaaaattgatttAAGTGACTCGGTAAACAATAACAATCCTAACACAGGTGCAACAAATcatgaaaaattatatttaaaacagcTGATTGCTAGTTGTTTGAACCAGAATGTAGCAAAATAAGAACCTCAAAAGAACTTCCCAATGACCCAAAACTAGAATAATTCTTCAACATGAATGTTGAACAGAAGGATACAAAAAGGTATATACAAAAGTTTGAAGTCTCTATATCCATAATCGGAAATCTAGCAACaaaatggaaggccacaggaACAGTTCTTGTAAAGGGAAGATGTGGTAGgccaagaaaaatatataaaaaggcaAAGGTGAAGAATGGTTAGAATGATCACATACAAACCACAGACCACATTCAAAGTGCTCATCTTGCTGCTGATAATGTCATTGTACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021701 False 432 lncRNA 0.40 3 17665762 17666461
TCONS_00021702 True 940 lncRNA 0.38 3 17665784 17666931

Neighbor

gene id symbol gene type direction distance location
XLOC_009819 NA coding upstream 63862 17600877 ~ 17601900 (+)
XLOC_009818 FP015958.1 coding upstream 94828 17570810 ~ 17570934 (+)
XLOC_009817 NA coding upstream 114703 17548791 ~ 17551059 (+)
XLOC_009816 CR855317.1 coding upstream 148680 17516948 ~ 17517082 (+)
XLOC_009815 fam131bb coding upstream 198300 17389116 ~ 17467462 (+)
XLOC_009821 NA coding downstream 2369 17669300 ~ 17670457 (+)
XLOC_009822 si:dkey-87o1.2 coding downstream 47733 17714664 ~ 17719792 (+)
XLOC_009823 them4 coding downstream 96917 17763848 ~ 17798412 (+)
XLOC_009824 rorc coding downstream 247005 17913936 ~ 18088024 (+)
XLOC_009825 si:dkey-17m8.2 coding downstream 475196 18142127 ~ 18153001 (+)
XLOC_009814 NA non-coding upstream 363243 17300153 ~ 17302519 (+)
XLOC_009826 NA non-coding downstream 835635 18502566 ~ 18512199 (+)
XLOC_009831 NA non-coding downstream 1708703 19375634 ~ 19412421 (+)
XLOC_009832 NA non-coding downstream 1713935 19380866 ~ 19381292 (+)
XLOC_009833 NA non-coding downstream 1841807 19508738 ~ 19513991 (+)

Expression


Co-expression Network