G225915


Basic Information

Item Value
gene id G225915
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 1756745 ~ 1760172 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU256300
ACAGCTTTGTGAGAGGAACAAAGCAAAAGTTATAATTCAGCGAAACTCTTTCCCTCCAGCTGTGTCCAGATCAACCAGTCGGTGATCATTTGTCTCTTATGAACTCTCATGAACTTGCTAGAAGAGCAAGGGCAGATGTCAAGATTTTTATTGTTCTTTGTGGAAGCTCCACAACCAATGCAGTTCTATGTAAAGCAGTTCTGGGCATTAAGTAAAATATCTTCTTTTATGTTTCACTGAAGAAAAAAATCATAGTCAAAATCGTAGTCAAATATACCAGCTTTATTATTTTTTTTTTTCCAACAGCATGTAACAGGGCATATAATCATAGCTACTTATTCTCTCTCTATCTCTCTCTTTAGAACAGGGTCAAGATGAAAACAACAGAGCAACCAGATAATTACACTAGTATCTCATCTGTACAAACCTGCCCCATAATGCCTCTGGCACAGACCTGCGCAAGATATGACTGATGGGAGTCCAAAAACTCATAATTTAAGTTATGAAAACTCTTCTTCCCAGAGTAATGCAAAAATAACTCCAAATACCAATAATACAAAAATCTCTTCTGCATACGCATGATTATAGATAATCACAGATGGGCCAAACAACTTTTGTTTCCACAAATCGACATTTTATCTACGTTCAGACCGGAGGCTAATGTGGCCTAAACCAAATGTGATTTGAGCCACTTCAATACGTGGTACTACTAAATCAGATACAGGTCGGATGTTTTGCAATACGACCTCAGTCTGAACGGTCATATTGGAATCACTTTTACATCAATCCAAATTGACATTAGTCAATTATGCGCGCCGAGGACGGGAGTCACTCCAAAGACTTCTTTGGTCAGTTAATATGGAAGACAGCCGTGACGGTATTAAGTGAAAGGACAGTGACAGCTCTATGCAAGGAAAACTTGAGGGAAAACTACGAAATTTAGAAAAACTTTGCTGTCTTTCTCCTCATATTCGTCCTCCTTATCGCCTGCGCACGAATTTGAGGCACATCAGCTTATAAATGAACACGTTAAACGCTGATTTCAGTGTCCTCCATGTTTACATCCATATGATAGCGTGCTGCGCGCTGCACCCTATTGTTATTGTTTTTGGGTTTTTTTGCCCAAATGGGTCAGTTCGGTTCCACGAACAGTTCACACTCGAATCTGATAATGTCCACAAGTATTTAATTGGCTTAAGAATGTCTAGAACAAACTCACATGCACACTCTTATACAATATACTGTATGAGTACACATACATAAGAATTTATAATTAAAAGTCTGGAAAGATCACAAATTAATAATCAAAGTGTCTCTCACAGAAAAAAAAACGCAGCTATGATTTCTATTTATAGTCTACCCGCTCCCATTAATATGCTATGTGTCTATTTTTTTAGTGTACTGTAAAATAAAGCCGGTTGCACTTTATTTTACAGTACGTGTACTTGCATGTACATACAGTGTACTCACCTATTAAAATACTGAGTAATACACGGTAACTACAGGGGTTAAGTTTAGGTTTAGGTGTAGGTCACCTAGTTATTACCCAGTTATTATAATTTCTGTAATACGTACATAGTATGTACATGGGGAACAGGACTGTAAAATAAAGAGCTACCTTAAAACCATATTCATATAAAAAAAATTCGGTACACTCAGGATGTCTTACAATAAAGCATAAACAAAGCCCTAAATATATCATATACATACAGCATCCGTATTATATTTACTATCCAAGATATATGCATCACCCTCTATATGCCCACATAACATTAACTGTGTTACATGGCGTAGGTTTAATAATGTAAAACAGTGAAACAGAAATGAGAACAATCAAAACATATAAAATCTGAGATATACTAAAGAATATAACTGTTACCCATTTCAACTACAGTGTTGTTAGAAACATTTTATAGTAACAAATGCACAAAAAAATAGGTTTTATTCTGTCAGAGAGGAAGCAGCTATTAAGAACAGCTTAAATCAGGGTTAGGGTTAGGGTTAGTTAGGTCATTATTACAAAATACAGCATTAAGAAATGGACAGCCGTTTCTTACACAAGCAATTTTTTCCAAAAGTAAGAATATTTTAAAGCTTCTCACCTCAAATACTAACATATACCTTGAAAATCAAAAAATCATATATTTTTTATGTTTTTGAAAATAGTCTCATGCTCACCAAGGCTGCATTTATTTGATCAAAAATACAGTAAAAAAAAAAACTGAAATATTACTAGAATTTAAAAGAACTGTTTTTGTATTTTAATGTATATGTCAAAGATGACAAAGCTGAATTTTCAGCATCATTAATCCAGTCTTCAGTGTCACGTGATCTTTCAGAAATCATTCTAATATGCTGATTTCTGCTCAAGAAATTTTAATTATTAATGTTTAAAGTTTTGTGCTGCTTAATATTTTTGCAGAAACTGCTAATTTTTTTCAGGATTCTTTAATAATTAAAGTGCAGCATTTATTTGAAATAGAAATCTTTTATAGCATTATAAATGTCTTTACTGTCACTTTTGAACAATTTAAGGCATCCCTTTTTTTTTTTCTTATTGAACGAACGTATCAGAATTTTGTTGTAAATGCTTTTAGGAATCATCCACATATATTGTTGTGCAAAAGCAAAATGCAATAACTGCATTTTTTGTCCAAGTCTCCTAGATTCAGAGAAATAGTGTAAAAAAAAAAAAAAAAACCACACTAGTTCCATTGTTGGCACAGTTACTGCATTTTGCCATTGTATGCCAGTATATGTACAAATGACAGTCTCCTCAATATCAAAACTATTTACTCTTGGAGCAAATAGAAACTGTGGCATGACTCATTTGTCTTACCACATTTTTTCCTTTTTAAAACATTTTGCTACTCAAACGTAACTAACAGTGGAAGTTTCATAGAAACCAGCTAATGGGCAACCATTGTGTTTTTGCATAGTGATACACCTCACTTTTCACCTAAACACTTAACAAAACCTATGGTTGCATAATACATAGCTTAACCATGCCTTGAAGACTTTTCTCATCCTCCTCAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAAAGTAACCAATAACTAAAATACATGTGTATATATACACGTACATGTCGTCTTCATTGGCAGGTTAAAGCTTGTATTCACTCAAAAACATTTACCGTCAGTTAAAAGCACTGCCTGGCCAGGCAGAGAAAACAACTCTGCTAGAAGCAGCTGCAAATGAGCCAAACCACTTCTAAATCATGTTGTTGCTGACCTGAAAAACAAGAAAAACAATTCAATAATCAAGTTTAAGAATTCGAGCCGTGAACAAAATGTGTCTGATATATTCGTTTCTGGAACTGTGTAATGTAACAGGTTAAGAGCATCATTTTTACACCATTTCAAACGCTCCAGTCCTCATAGCACATTAGTCATCTAATATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256300 True 3428 lncRNA 0.34 1 1756745 1760172

Neighbor

gene id symbol gene type direction distance location
CI01000053_01751833_01753354 ATF5B coding upstream 3294 1751833 ~ 1753451 (+)
CI01000053_01663005_01713138 PHLDB1 coding upstream 43548 1661039 ~ 1713197 (+)
CI01000053_01649924_01653347 NA coding upstream 103204 1649924 ~ 1654260 (+)
CI01000053_01622562_01627092 ARCN1B, ARCN1 coding upstream 129143 1622562 ~ 1627602 (+)
CI01000053_01615318_01617274 CRYABA coding upstream 139103 1615247 ~ 1617642 (+)
CI01000053_01790197_01796045 POU2AF1 coding downstream 29017 1789189 ~ 1797457 (+)
CI01000053_01860130_01870321 NA coding downstream 99798 1859970 ~ 1870436 (+)
CI01000053_01972623_01978167 TUBD1 coding downstream 212451 1972623 ~ 1978639 (+)
CI01000053_02071290_02083892 NA coding downstream 311118 2071290 ~ 2084045 (+)
CI01000053_02086227_02097758 CUL5, CUL5A, CUL5.L coding downstream 325109 2085281 ~ 2097947 (+)
G225889 NA non-coding upstream 150491 1602599 ~ 1606254 (+)
G225885 NA non-coding upstream 211626 1544851 ~ 1545119 (+)
G225801 NA non-coding upstream 213850 1542563 ~ 1542895 (+)
G225796 NA non-coding upstream 224548 1531757 ~ 1532197 (+)
G225916 NA non-coding downstream 4121 1764293 ~ 1766328 (+)
G225917 NA non-coding downstream 6884 1767056 ~ 1767290 (+)
G225921 NA non-coding downstream 11196 1771368 ~ 1771634 (+)
G225925 NA non-coding downstream 19023 1779195 ~ 1779394 (+)
G225926 NA non-coding downstream 20307 1780479 ~ 1780716 (+)
G225952 NA other downstream 112702 1872874 ~ 1873295 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other downstream 833055 2592558 ~ 2595467 (+)
G226292 NA other downstream 1276430 3036602 ~ 3046783 (+)
G226347 NA other downstream 1512202 3272374 ~ 3274911 (+)
G226399 NA other downstream 1860626 3620798 ~ 3697529 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G105469 NA non-coding NC_056713.1 CM032082.1 10506991 ~ 10507793 (+)