XLOC_009821


Basic Information

Item Value
gene id XLOC_009821
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17669300 ~ 17670457 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021912
AGGATTTATGCAagagtaaaacatttaaaagaaaaaaatccacgAAAAGGCAGGGTTTCTAAGGTGCTGATTAATCCTATTTAAATTGAATGTATAATTAAAATTAGCAAAACTGATGAAACTAAGACcgcaatttttataattattcaaaacTAGATTTTCTTATAGTATCATGAGTAAATAGATTGTGTCATGTGACATTACCTGCGTGACGTAGAGTCCAGTTTAAAGCGCAGGTAGAAGAACCCGGAAAAAAACACAAACGACTAAATCATATTTACAGCCTGCTAAAAGTCTTTCTCGACAGTTTTGCGTCTAATATAATTCTCTGATTAAAGGTAAGTAAAATTATCTTATAGCCAACCTCGGTTTCTGTATGAATATGCATAATGACATTAATATGCATAACAGGCACAGACGTTTAACCCTTCAGAGGGTGAAAATTTCTAGAAGTCAAAGTGTTGTTAAAGGCATATTGATCATTCTAAAAATTAgaagaaagaaaactaaaaatcgTTTAATAAATCATGCAGTTATTAGTTTGCGCCATTAAATAGGCTGCTTTCACTTTTCTTTTTCCTCCTTCACATGTCCGAAGGACAGTCACCATGCCCAGTACTGACCGCGCTGGATTGACCCACTGCAAGTTTGTTCTCATATTTGCCGTCGTTACGGATCTTTTCGGAGTCTCTACCCTCCTCATCGGCATCTTCGTCCCACTTGAAATCGCGGGTCGTGACTTCGGTGATCTATTGGTGTACTCTGGAGCTGTGCTAGTGTTGATGTCTATGGGGGCTTGGATCATGTGGTACAGTGGGAATATTGATGGTTTGTTATCAGGAAAGGAATTAAGACATAAACACGACGCCGTGGACCTGCTCGCTCGCACGCTCAGCCGCCGCATACGGAAACCCCACCGAGGCCACAGCACGTCTTGACCTTCGACCTAAGCACTTCGGCCATATACATATCAGATATATATTTGAACTCTGATAATTGACAATGTGGTTTGTGCAAACAAAACACGTTGCAGCCTACCTGTACTGTGAAATAAGCTAGGCTATAACTGAGAGTTGCACATGTGTTATGAgcaatttttactttatttctttttgtAGTAATCATGTTTGTTGACAAATAAAATTCAAGCACTGTCAA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021912 True 1158 lncRNA 0.39 1 17669300 17670457

Neighbor

gene id symbol gene type direction distance location
XLOC_009820 NA coding upstream 2369 17665762 ~ 17666931 (+)
XLOC_009819 NA coding upstream 67400 17600877 ~ 17601900 (+)
XLOC_009818 FP015958.1 coding upstream 98366 17570810 ~ 17570934 (+)
XLOC_009817 NA coding upstream 118241 17548791 ~ 17551059 (+)
XLOC_009816 CR855317.1 coding upstream 152218 17516948 ~ 17517082 (+)
XLOC_009822 si:dkey-87o1.2 coding downstream 44207 17714664 ~ 17719792 (+)
XLOC_009823 them4 coding downstream 93391 17763848 ~ 17798412 (+)
XLOC_009824 rorc coding downstream 243479 17913936 ~ 18088024 (+)
XLOC_009825 si:dkey-17m8.2 coding downstream 471670 18142127 ~ 18153001 (+)
XLOC_009826 NA coding downstream 832109 18502566 ~ 18512199 (+)
XLOC_009831 NA non-coding downstream 1705177 19375634 ~ 19412421 (+)
XLOC_009832 NA non-coding downstream 1710409 19380866 ~ 19381292 (+)
XLOC_009833 NA non-coding downstream 1838281 19508738 ~ 19513991 (+)
XLOC_009837 BX005389.4 non-coding downstream 2016256 19686713 ~ 19715210 (+)

Expression


Co-expression Network