G225941


Basic Information

Item Value
gene id G225941
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 1811009 ~ 1812486 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU256344
TTCCAAGCTGGTGTGCAGCAGGCAGAAAACATGTGCTTCTGCCAACTGTACACACCCTACTGTTTGACTGCAAAACATTCCCTGTTTCTGTAGTTAATGAATACACCATTGCGTGACCGTTAAATGATTAAGTCGTGCCATGTTCCGAAGTTAAAAGAGATACGGGACATTTACTTTAGATGAATGAAAACTGATGTCTGAGCATGTTTTAAAAAAAAAAGATATTCAAGCATGAATAAAGTTTTCTATCTAATTTCTAAAGACTTCTTTGACACTGTAAATGCACTGCGTATAGTTTGGGACTCGTATTTTACATGAGCTGATAATTATATGATTATTTCAGAACTGTTTACTATTTCATACCATTTTCATATATTTTTGAACCTCGTGAGATACCTTTTCTTTGTTTCATTTTGCATCGTCAGAACTGAAGTTAACGGTGCTGCGTTTTCCTTTCGATTTCATCTTTTGGTGAAAGTGTGTGATAATGAAAGTTATTGTTCCACGATGATGATGATGATGAAAAGCTGTGATTTTACTTTTAAAAATGTAAGGCAGCAATAAAATTTAGACAGACATTTTTACAGTGTAGGAGCAGTGTAGGAGTTATAGGAGCACAAATTTTAACAGTTGTGAACTGTAGCCTATAAATGCATTGTTTAATATCAAATCTGTTTTTATAAATATATGCTGTGTATACATTTTTTTCCCTCCTACTTTCCTCGTGTTGAATGTTGATATGCAAAACAATAATTGTGCCCTTAGTAGCTACTACAATTGTTTTTGCACGTTTAAAAAAAAAAAAACTGCCAAAGCTCCGATGTACATTTCAAGAGTGAAAAAACAGATACTGAACGTTGAAAATCGGAAATAGTTTCCCCATCATTCATACATCTTAGCAAGTTTAACAAACGATTCCAGTAAAATTATCAAAAAAATATGTTTATTGTAGAAAAGATAAATGAATATTTTGTAAATTATACTCACACATATTTAGCTCTCTGCAATCAACCTTGTTGCTTAACAAACAACTCTCCTAAATTAAGCCTAATCATGCATTCTATCATTGCTTTTTCTTTGATTTAATCTAAAATACAACAAATGCATTCAAATGCATCAGTTATGACACTGAATTTTCGCGCAAAGTGCTTCAAAAATTGCATTTTATAAGTAACACATCTCTGAGTTTGAGGTATCCCTTCTGAAATAACTGTCGTCGCTATATGAAAACAAACAGTCTGATGAGCTGTAGGGCGCATACTCCGAAGTTGCCATGCCTTCCTGCGCATTGGACCAGTGCGACAGACAAAAACAATGCTGAAGGTTGCAATGCTGATAGTGGTAATTTTCTGGAGAGAAACTGGAGCTCAAATCCATCCGTGTCGGGGAGCTGTAGCACGAGGAAGATGAAGAGTGGGACTGAGGGGGAGAGTAACTGTTGTAGTCGACTGGACTGGGGAGATTGAAGGAGTCTGAGG
>TU256343
CTGCAATCAACCTTGTTGCTTAACAAACAACTCTCCTAAATTAAGCCTAATCATGCATTCTATCATTGCTTTTTCTTTGATTTAATCTAAAATACAACAAATGCATTCAAATGCATCAGTTATGACACTGAATTTTCGCGCAAAGTGCTTCAAAAATTGCATTTTATAAGTAACACATCTCTGAGTTTGAGGTATCCCTTCTGAAATAACTGTCGTCGCTATATGAAAACAAACAGTCTGATGAGCTGTAGGGCGCATACTCCGAAGTTGCCATGCCTTCCTGCGCATTGGACCAGTGCGACAGACAAAAACAATGCTGAAGGTTGCAATGCTGATAGTGGTAATTTTCTGGAGAGAAACTGGAGCTCAAATCCATCCGTGTCGGGGAGCTGTAGCACGAGGAAGATGAAGAGTGGGACTGAGGGGGAGAGTAACTGTTGTAGTCGACTGGACTGGGGAGATTGAAGGAGTCTGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU256344 False 1478 lncRNA 0.36 1 1811009 1812486
TU256343 True 477 lncRNA 0.42 1 1812010 1812486

Neighbor

gene id symbol gene type direction distance location
CI01000053_01790197_01796045 POU2AF1 coding upstream 13552 1789189 ~ 1797457 (+)
CI01000053_01751833_01753354 ATF5B coding upstream 57558 1751833 ~ 1753451 (+)
CI01000053_01663005_01713138 PHLDB1 coding upstream 97812 1661039 ~ 1713197 (+)
CI01000053_01649924_01653347 NA coding upstream 157468 1649924 ~ 1654260 (+)
CI01000053_01622562_01627092 ARCN1B, ARCN1 coding upstream 183407 1622562 ~ 1627602 (+)
CI01000053_01860130_01870321 NA coding downstream 47484 1859970 ~ 1870436 (+)
CI01000053_01972623_01978167 TUBD1 coding downstream 160137 1972623 ~ 1978639 (+)
CI01000053_02071290_02083892 NA coding downstream 258804 2071290 ~ 2084045 (+)
CI01000053_02086227_02097758 CUL5, CUL5A, CUL5.L coding downstream 272795 2085281 ~ 2097947 (+)
CI01000053_02103844_02105757 MRPL28 coding downstream 291068 2103554 ~ 2105895 (+)
G225933 NA non-coding upstream 10353 1800245 ~ 1800656 (+)
G225926 NA non-coding upstream 30293 1780479 ~ 1780716 (+)
G225925 NA non-coding upstream 31615 1779195 ~ 1779394 (+)
G225921 NA non-coding upstream 39375 1771368 ~ 1771634 (+)
G225917 NA non-coding upstream 43719 1767056 ~ 1767290 (+)
G225940 NA non-coding downstream 148 1812634 ~ 1818169 (+)
G225946 NA non-coding downstream 32160 1844646 ~ 1844940 (+)
G225947 NA non-coding downstream 32890 1845376 ~ 1845589 (+)
G225948 NA non-coding downstream 33230 1845716 ~ 1848018 (+)
G225956 NA non-coding downstream 74497 1886983 ~ 1887184 (+)
G225952 NA other downstream 60388 1872874 ~ 1873295 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other downstream 780741 2592558 ~ 2595467 (+)
G226292 NA other downstream 1224116 3036602 ~ 3046783 (+)
G226347 NA other downstream 1459888 3272374 ~ 3274911 (+)
G226399 NA other downstream 1808312 3620798 ~ 3697529 (+)

Expression


Co-expression Network