G225940


Basic Information

Item Value
gene id G225940
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 1812634 ~ 1818169 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU256338
AGTACCATAGAGGTCCGTATTTGAAGGCATATATCCATTAGACCACTGCGATGAAGTGGGACACACGAAATTACTGCCGCTGAAAGTCTCAGGTGGCATCATGTGCATCATCTGTTGATGATCATAATCATTCTCCATCGGGATGTTGACATTTTCGGTAAAGGGACGTGTCTGGAAATAGGGCTCTGGAGCTTGCATTCCAGAGAAGACATCAAGGTGGGCTGTTGGGAACACAGAAGAAAATGCTGGCTTGAGCACAGGAGAACATTTAAATTAGGCCAGTAAGACTTGGGATGATGTCACGAGACCATCAGCCAACAGCTAAATCACATTTGAATAGTAGTTTATAAATAGGAGATCATTCCAGGGTCTGTAAGGAGCACCTATAGATGTAGGTGTCATTGTTCTTTTATTTATTTTTGATTTTTTCCTTACAATTGTAGATGTAGAGCTGATGCCTGACGGTGGATGAAAATGGTTTCTATTTTGGAGGCTCTGTGCTTCTGCAGTAACTCCTTGACAGTGGTCTTCACACGCACACCCTGGTATACCTTGGGTTTATCTGCTGAAAAAGAACCCCCATCATTTTTTATTTCGGTTTATTTTCATTCACCACTAGGCTATGCATTGATTTTCAATATTTTTGTCCAAATTTGCATGTTCTGTAAATGATTCTGTGCAGAATAAGTATATTCATGTGAACAGAACATTTTCATTTCCCAAAAGAAAAATTCTAACGTATTGAAATCAGTTTTTACATAAATCCTTATTTAAGACAATGGAGCTACTACGTTGTTGAAAAATACACACATTTTTGAGGGACTTCAAGGTCAAAGATGTAGTATCTCCACCTTTTTTTCTATCTTTCTTTCTTTCTTTTTTTTAAAGATTTTTATATGAATACATGTTTATACATATATTAAAAAAATCAGTGTGAATATCAGTGTGGCGTATCCAATAAGCAATTTATTAATATAATTGTTTTACCTTGAAAAATGTGTTTTGATTTTGTTTTCAAAATAATGAAGTTGCAAGGAAAGTGTTTTGTCACTTTTTACTTGATGGATACACCATTGACATTTTCTCATTAAATCAAAATATTTGTATAAAATGGTATGCATGCTTTTCCAAAAATGAATGAAACAACAGGAATAGCGAACACCGGCGCATGTAGGCTATAACTAGATCTTTAAAAGATTTCGACGTCCTTATTTGTCATTGCCCCTCTTGTTCAGCCACACAGTTTTGCATTATTCCAATTTGCCAGAGGAAAATATAAAATATAAGATAGAGCCTAGTAAATATATATATATCAGTAAATAAATACAAGATAAGATATCTCTCGAGATTAAAAAACTATGCTCGTCTTCCCAGTTAAGCCTCTTTTGGTCTGGTTGCAGCAGTAATCCGGCAGTGAATGGGTTAGTTTTCGCATAACAATGGACAGTAGTGAATTTCGAGAAACATGCTCTCCAGCCATCTTTGGCACAAGGCGACAGCTTTAATTGGAGGTTTAAGCAGTTTAGTTTCATGTAGCTGTAAATTAAAACCCGACTAAACTGGAGAGTAGCCTAATTATCGACCGTTTCATTGGAGAGCAGAAGGTTCGCACAAAGTTGGGTTTGCGGGAAGCGAAGTGAAAGCACTGTAAAACGCTGCTTGCCAGGCGAGGAGAAAGAGAAGCTTCCTCGGTCGACGCCACTACAAATTACAAACGTAAGTAAAATATTCTTATAATAACGAAAGCCGCATACACGCGGACTGAGAAAATACAGCGGGAAGTAGATGTTAAAGTCAGTGTCCAACAGAAAACCCGATTAGATTTGGTGCAAAGAAGCCAGATTTCTTCACGAGCGCGCTGTCGAATATAGCGACAATTTGGTGTTTTAAATCTCCTAAAAACGTCCGGAATCCAAGTTAGTTTTTGCGATCCGCTCGCCAGATGTAAAGTTATTTCTTGATATAGTTAATGGGCAGTCCTCATCTCTTCCTACACGAGTAAAGCCGCGCCTAA
>TU256337
GCATAACAATGGACAGTAGTGAATTTCGAGAAACATGCTCTCCAGCCATCTTTGGCACAAGGCGACAGCTTTAATTGGAGGTTTAAGCAGTTTAGTTTCATGTAGCTGTAAATTAAAACCCGACTAAACTGGAGAGTAGCCTAATTATCGACCGTTTCATTGGAGAGCAGAAGGTTCGCACAAAGTTGGGTTTGCGGGAAGCGAAGTGAAAGCACTGTAAAACGCTGCTTGCCAGGCGAGGAGAAAGAGAAGCTTCCTCGGTCGACGCCACTACAAATTACAAACGTTGCTGAAGACAAAACATCTTATACGAAAGAAAAAAAGAATATTTACTTACCAGACATATTGGCCTGAAAAGGAGGAAAACTCTGGAAGAACTACAGTGAAATACCCCAACGTCAGTTCTTTGCTCTATTATATGGGCAAGAACGAATTATTCACAAAAGTCTCAAAAAGTCTCAACAAAGTAACCTCAAAACACTCTCAGGACATACAATTATACAGTAATATAGCTAGGGATATTTTAGTTTGAGTTTTTCTCCCCTCATCCCTACTATTTAAAACCCCAAGAACTCAATGATTTGACAATGATTTGATTGCGCGATACTTTCAATTTGAATATTCAAAGGCTTCGTAAAAAGACTTATTTCTGAGTGATATTCGCTATTACAGTGCATATAATAACATCTCTTTTAATAGAATGTTGTGTTATTTCACATTTTGACATCAACTAAATATATATTTTTAACATTTTATCATCCTTTTGCTGTTGGTGGTTGGAGTCTCCCTTAGAAGCACTATTTCAACTTTGCAGTGAGACTGAAGGCACAAATGAAGCTTTACATGCCATAACACATTGTAAATAGCTTCTCTAATAGGTAGTCTTGGAAAAAAAAATAATTATTACGTCGTGTAGATCATATTTATGCAGTATTTTAAGAATTATTGGAGTTGTGGGCGTGGCATATGATAGCAGCCATGTTTGTCATTAGAACAATTGGGACGTCTGCTAAAGTCAGGTTACTTGGATAGTGGAGGCAGGTATAAGAAGGCTAAATATGAAATTTATTCAGTTATATTTATATATTTAATTCAAAGGGTCAGTTGCTGCAGTTGTTGAAGGTCAAAAGTAAGTAAACTGAAGGCGATGTTCACAATAATACTTAGGCTATTAATTTCTTTTCTCACGGTATTTTCCGTTTTAATACAGTAGTTTCATTATTCAATGGATATTGCATATTTATAATCATTATCATCATCATATAGATCCCCAAAATAAATAGAAGCGGTTTGATGCTGAGTGATGCTCATAACAGAATCTCACACCTGAGTTTAGTCAGTTTTATTTTTAAAATAGGCCTAATTTAAACGAAAAAGCTCCAAGTGGCATATTTAGGCCTACATTTCTTCGAGACCATAATGCTGTTGTTTATTTAGTAGCCTACGTGCGTCATATTTAATGGTCGCGCATTTAAGAAGACTGAAAGCAGGCAGAATTGATGCCGTGCAGGTGTTCTTTGTCTTAGAAAAGAAGTCGGGAAAAGGGTCCTTGTGACATGTAGGCCTAGTACAGACAAACTGAACATTTCGTTCGCAAGTGCAGAATAATTGGAGATTAAAGTAGCTATTGATAAAACATAGAGTAGCCTACTTTATAAACACGTCTTTAAGCATCTTGAATATAGTCCTAATTCAACTGTGTCTTGGCGGAATTTCTAACGGACGTTTAACTCCTTTGTGAAATTGATTTGTAAAGTTAATCCGCTGCAAACAGACCTCCGGTTTCAAAATATTACTTTCTTACCAGTCTCTTATTATCAGTCACTTTGATGAACAAATCTTTCATAATCCTAAGAAATCTCTAAGGAACACTTCAACCGTGTTGGAGAGGTCTGTTGTCACGAGAGCTAGCCAGTTGAATGTCGCCCCCTGGTGATTAAACCGGGGAATGCCTAGGTCCTGTCACACGACCTGCATTTGTATTTCATGTAACTATGCTGGTCTGACACGGTTTATTAAGAGTCACTTAATGCACTCAGTTTGGCAATAAATGTAATAATAATAAACAAATTCAGCAAATTTTCAAAAAAAAAATCCCATGCAGAGGTAAATTCTACTGGATTGAAGATACAGACTAGAGGAAGAATGTAAATTTATGCAAGAATGTTATTGAAGAACAAATAATAACCAGTTTAGAATAAAGTGAACAATTTAAAGTGACAAAAACATTGTATTGTATTACTTTTATTACTTTAAATTTAGCACAAAACAATTGCCTTGTGTGTTTGTTCTTGTCACATCAGGGTTCAGTCACTATGTTGCCATCCACCTATTTTTGTGTGAATTTTGGGATATCATATAAAAAACACTGGATGGAA
>TU256342
GCATAACAATGGACAGTAGTGAATTTCGAGAAACATGCTCTCCAGCCATCTTTGGCACAAGGCGACAGCTTTAATTGGAGGTTTAAGCAGTTTAGTTTCATGTAGCTGTAAATTAAAACCCGACTAAACTGGAGAGTAGCCTAATTATCGACCGTTTCATTGGAGAGCAGAAGGTTCGCACAAAGTTGGGTTTGCGGGAAGCGAAGTGAAAGCACTGTAAAACGCTGCTTGCCAGGCGAGGAGAAAGAGAAGCTTCCTCGGTCGACGCCACTACAAATTACAAACGTTGCTGAAGACAAAACATCTTATACGAAAGAAAAAAAGAATATTTACTTACCAGACATATTGGCCTGAAAAGGAGGAAAACTCTGGAAGAACTACAGTGAAATACCCCAACGTCAGTTCTTTGCTCTATTATATGGGCAAGAACGAATTATTCACAAAAGTCTCAAAAAGTCTCAACAAAGTAACCTCAAAACACTCTCAGGACATACAATTATACAGTAATATAGCTAGGGATATTTTAGTTTGAGTTTTTCTCCCCTCATCCCTACTATTTAAAACCCCAAGAACTCAATGATTTGACAATGATTTGATTGCGCGATACTTTCAATTTGAATATTCAAAGGCTTCGTAAAAAGACTTATTTCTGAGTGATATTCGCTATTACAGTGCATATAATAACATCTCTTTTAATAGAATGTTGTGTTATTTCACATTTTGACATCAACTAAATATATATTTTTAACATTTTATCATCCTTTTGCTGTTGGTGGTTGGAGTCTCCCTTAGAAGCACTATTTCAACTTTGCAGTGAGACTGAAGGCACAAATGAAGCTTTACATGCCATAACACATTGTAAATAGCTTCTCTAATAGGTAGTCTTGGAAAAAAAAATAATTATTACGTCGTGTAGATCATATTTATGCAGTATTTTAAGAATTATTGGAGTTGTGGGCGTGGCATATGATAGCAGCCATGTTTGTCATTAGAACAATTGGGACGTCTGCTAAAGTCAGGTTACTTGGATAGTGGAGGCAGGTATAAGAAGGCTAAATATGAAATTTATTCAGTTATATTTATATATTTAATTCAAAGGGTCAGTTGCTGCAGTTGTTGAAGGTCAAAAGTAAGTAAACTGAAGGCGATGTTCACAATAATACTTAGGCTATTAATTTCTTTTCTCACGGTATTTTCCGTTTTAATACAGTAGTTTCATTATTCAATGGATATTGCATATTTATAATCATTATCATCATCATATAGATCCCCAAAATAAATAGAAGCGGTTTGATGCTGAGTGATGCTCATAACAGAATCTCACACCTGAGTTTAGTCAGTTTTATTTTTAAAATAGGCCTAATTTAAACGAAAAAGCTCCAAGTGGCATATTTAGGCCTACATTTCTTCGAGACCATAATGCTGTTGTTTATTTAGTAGCCTACGTGCGTCATATTTAATGGTCGCGCATTTAAGAAGACTGAAAGCAGGCAGAATTGATGCCGTGCAGGTGTTCTTTGTCTTAGAAAAGAAGTCGGGAAAAGGGTCCTTGTGACATGTAGGCCTAGTACAGACAAACTGAACATTTCGTTCGCAAGTGCAGAATAATTGGAGATTAAAGTAGCTATTGATAAAACATAGAGTAGCCTACTTTATAAACACGTCTTTAAGCATCTTGAATATAGTCCTAATTCAACTGTGTCTTGGCGGAATTTCTAACGGACGTTTAACTCCTTTGTGAAATTGATTTGTAAAGTTAATCCGCTGCAAACAGACCTCCGGTTTCAAAATATTACTTTCTTACCAGTCTCTTATTATCAGTCACTTTGATGAACAAATCTTTCATAATCCTAAGAAATCTCTAAGGAACACTTCAACCGTGTTGGAGAGGTCTGTTGTCACGAGAGCTAGCCAGTTGAATGTCGCCCCCTGGTGATTAAACCGGGGAATGCCTAGGTCCTGTCACACGACCTGCATTTGTATTTCATGTAACTATGCTGGTCTGACACGGTTTATTAAGAGTCACTTAATGCACTCAGTTTGGCAATAAATGTAATAATAATAAACAAATTCAGCAAATTTTCAAAAAAAAAATCCCATGCAGAGGTAAATTCTACTGGATTGAAGATACAGACTAGAGGAAGAATGTAAATTTATGCAAGAATGTTATTGAAGAACAAATAATAACCAGTTTAGAATAAAGTGAACAATTTAAAGTGACAAAAACATTGTATTGTATTACTTTTATTACTTTAAATTTAGCACAAAACAATTGCCTTGTGTGTTTGTTCTTGTCACATCAGGGTTCAGTCACTATGTTGCCATCCACCTATTTTTGTGTGAATTTTGGGATATCATATAAAAAACACTGGATGGAAATGCCAAGATATATTCTAAAAATGTGCACACAAAAAAAATGTATGTGCTCAGTTGAGACGGATAATGTTTTTATTCATGTGCATAAACTATGATGGAAACACATTTACCAAATAAATCCCTCAATGCGCAACAAAAAACTTGTGTGACTGCCTTAACAGTGGATGTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU256338 False 2014 lncRNA 0.38 2 1812634 1815127
TU256337 False 2378 lncRNA 0.36 2 1814545 1818001
TU256342 True 2546 lncRNA 0.36 2 1814545 1818169

Neighbor

gene id symbol gene type direction distance location
CI01000053_01790197_01796045 POU2AF1 coding upstream 15177 1789189 ~ 1797457 (+)
CI01000053_01751833_01753354 ATF5B coding upstream 59183 1751833 ~ 1753451 (+)
CI01000053_01663005_01713138 PHLDB1 coding upstream 99437 1661039 ~ 1713197 (+)
CI01000053_01649924_01653347 NA coding upstream 159093 1649924 ~ 1654260 (+)
CI01000053_01622562_01627092 ARCN1B, ARCN1 coding upstream 185032 1622562 ~ 1627602 (+)
CI01000053_01860130_01870321 NA coding downstream 41801 1859970 ~ 1870436 (+)
CI01000053_01972623_01978167 TUBD1 coding downstream 154454 1972623 ~ 1978639 (+)
CI01000053_02071290_02083892 NA coding downstream 253121 2071290 ~ 2084045 (+)
CI01000053_02086227_02097758 CUL5, CUL5A, CUL5.L coding downstream 267112 2085281 ~ 2097947 (+)
CI01000053_02103844_02105757 MRPL28 coding downstream 285385 2103554 ~ 2105895 (+)
G225941 NA non-coding upstream 148 1811009 ~ 1812486 (+)
G225933 NA non-coding upstream 11978 1800245 ~ 1800656 (+)
G225926 NA non-coding upstream 31918 1780479 ~ 1780716 (+)
G225925 NA non-coding upstream 33240 1779195 ~ 1779394 (+)
G225921 NA non-coding upstream 41000 1771368 ~ 1771634 (+)
G225946 NA non-coding downstream 26477 1844646 ~ 1844940 (+)
G225947 NA non-coding downstream 27207 1845376 ~ 1845589 (+)
G225948 NA non-coding downstream 27547 1845716 ~ 1848018 (+)
G225956 NA non-coding downstream 68814 1886983 ~ 1887184 (+)
G225957 NA non-coding downstream 71762 1889931 ~ 1890162 (+)
G225952 NA other downstream 54705 1872874 ~ 1873295 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other downstream 775058 2592558 ~ 2595467 (+)
G226292 NA other downstream 1218433 3036602 ~ 3046783 (+)
G226347 NA other downstream 1454205 3272374 ~ 3274911 (+)
G226399 NA other downstream 1802629 3620798 ~ 3697529 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G9136 NA non-coding CI01000000 null 14035245 ~ 14035575 (-)
striped catfish (Pangasianodon hypophthalmus) G221681 NA non-coding NC_047608.1 CM018554.1 6867784 ~ 6870274 (-)
bowfin (Amia calva) AMCG00004429 NA misc CM030121.1 CM030121.1 49411207 ~ 49425182 (-)
tiger barb (Puntius tetrazona) G105601 LOC107713465,LOC107717180,LOC107597510 non-coding NC_056713.1 CM032082.1 11180032 ~ 11185102 (+)