XLOC_009822 (si:dkey-87o1.2)


Basic Information

Item Value
gene id XLOC_009822
gene name si:dkey-87o1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17714664 ~ 17719792 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019611
CGTGCGTTAAAGACCATTCATGCAGTCTGGTTCAGAAGTTAAACCGGTGTATAGACCACGTCTTGTGTGCACTCCGTTGATTATGCTGGCATATATTTAGGAAATTTTGAATATTTAGATTTAGCCACGCTTGAAATTTAAAAACAGTGCAATGAAAGACAAAATAATTTTCACGTCTGGCGAGTCAAATCTTCACAGTAGAGTAATGAAACCTCAACGGAACAGGATGAGAGCCATATCTGCAATGGTTTTCCTGGCTTTATGTGCACTGCTGATTATAATCTATCAAGCTGTACAGCAGGAGCTCAACATCCGCAACCTGAAAGCACGCATCATTGTTTCTGGCGAACAGGTGAAGTTGAAGGAAGATGGCATCATGTCAGCTAAGACAAAAGTAGAAGAGATGAACAAGAAGCTCAGTCCTCTGACTACACAGAGGGATCAACTCAAAAAACAGAGGGATGAGATTAAGAAAGGCACTGCTGAATCTGAAAAGGAACTAGGAACCTGCCAAGCTGACAAGGGTAAATTGGAGAAGCAGAGCAGTGATGCAAAAGATGCACTTCAGAAACTAAAGGAAGGCCAAGAGGCTGAGAGGAAGAAAGCAGAGGAGGAGATTGAGGGTCTAAAACGACAAATTCTTGAACGAGATTTAAAGATCTGCAAATACGTTGATGTTACAGTGGAAGAGACAAAgaaattGTGCGCAGGAACTTTGTGAAGGAACTTTAGAAACTCTGTTTTCTCAGCCAAAATGTTctgtattgtgattttttttttccagtgttgaATGTTAAATGTATGTTAAAAAGGTATGGACTGTGCTTCTTTATAAACTCTACACAAAATAAAGTTGTAATAAAGACTTAAAGAAAAA
>TCONS_00019612
CAACAGTATCAAGGaagtgttgagtttttttttcttccctcccACACACTGGTTTGGTTAAACTTAAAAATCCAGTTGTACAGGATGAGAGCCATATCTGCAATGGTTTTCCTGGCTTTATGTGCACTGCTGATTATAATCTATCAAGCTGTACAGCAGGAGCTCAACATCCGCAACCTGAAAGCACGCATCATTGTTTCTGGCGAACAGGTGAAGTTGAAGGAAGATGGCATCATGTCAGCTAAGACAAAAGTAGAAGAGATGAACAAGAAGCTCAGTCCTCTGACTACACAGAGGGATCAACTCAAAAAACAGAGGGATGAGATTAAGAAAGGCACTGCTGAATCTGAAAAGGAACTAGGAACCTGCCAAGCTGACAAGGGTAAATTGGAGAAGCAGAGCAGTGATGCAAAAGATGCACTTCAGAAACTAAAGGAAGGCCAAGAGGCTGAGAGGAAGAAAGCAGAGGAGGAGATTGAGGGTCTAAAACGACAAATTCTTGAACGAGATTTAAAGATCTGCAAATACGTTGATGTTACAGTGGAAGAGACAAAgaaattGTGCGCAGGAACTTTGTGAAGGAACTTTAGAAACTCTGTTTTCTCAGCCAAAATGTTctgtattgtgattttttttttccagtgttgaATGTTAAATGTATGTTAAAAAGGTATGGACTGTGCTTCTTTATAAACTCTACACAAAATAAAGTTGTAATAAAGACTTAAA
>TCONS_00019613
GTAGGTAGTTGAATCAGTTTAGGTCAACAGCATAGACACCGTCATTAGAACTAagtgaaaaagaaagagaaattaaaataatttttttctctgAGAAACACTTTTGGTTTTCTCTTCCTCACTCTTCTTACTTTTATTACCTCAGGATGAGAGCCATATCTGCAATGGTTTTCCTGGCTTTATGTGCACTGCTGATTATAATCTATCAAGCTGTACAGCAGGAGCTCAACATCCGCAACCTGAAAGCACGCATCATTGTTTCTGGCGAACAGGTGAAGTTGAAGGAAGATGGCATCATGTCAGCTAAGACAAAAGTAGAAGAGATGAACAAGAAGCTCAGTCCTCTGACTACACAGAGGGATCAACTCAAAAAACAGAGGGATGAGATTAAGAAAGGCACTGCTGAATCTGAAAAGGAACTAGGAACCTGCCAAGCTGACAAGGGTAAATTGGAGAAGCAGAGCAGTGATGCAAAAGATGCACTTCAGAAACTAAAGGAAGGCCAAGAGGCTGAGAGGAAGAAAGCAGAGGAGGAGATTGAGGGTCTAAAACGACAAATTCTTGAACGAGATTTAAAGATCTGCAAATACGTTGATGTTACAGTGGAAGAGACAAAgaaattGTGCGCAGGAACTTTGTGAAGGAACTTTAGAAACTCTGTTTTCTCAGCCAAAATGTTctgtattgtgattttttttttccagtgttgaATGTTAAATGTATGTTAAAAAGGTATGGACTGTGCTTCTTTATAAACTCTACACAAAATAAAGTTGTAATAAAGACTTAAAGAAAAACGTTTCATTAGTTTTTGCggagatttttatattttttttataaaactgtttatttctCTTTTTACAATATAAATTGCTGAAGCAGCTTTTTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-217 No description available

Ensembl:

ensembl_id ENSDARG00000095796

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019611 False 877 mRNA 0.39 5 17714664 17719700
TCONS_00019612 False 729 mRNA 0.40 5 17715243 17719694
TCONS_00019613 True 889 mRNA 0.37 4 17715377 17719792

Neighbor

gene id symbol gene type direction distance location
XLOC_009821 NA coding upstream 44207 17669300 ~ 17670457 (+)
XLOC_009820 NA coding upstream 47733 17665762 ~ 17666931 (+)
XLOC_009819 NA coding upstream 112764 17600877 ~ 17601900 (+)
XLOC_009818 FP015958.1 coding upstream 143730 17570810 ~ 17570934 (+)
XLOC_009817 NA coding upstream 163605 17548791 ~ 17551059 (+)
XLOC_009823 them4 coding downstream 44056 17763848 ~ 17798412 (+)
XLOC_009824 rorc coding downstream 194144 17913936 ~ 18088024 (+)
XLOC_009825 si:dkey-17m8.2 coding downstream 422335 18142127 ~ 18153001 (+)
XLOC_009826 NA coding downstream 782774 18502566 ~ 18512199 (+)
XLOC_009827 rxrbb coding downstream 815042 18534834 ~ 18572875 (+)
XLOC_009831 NA non-coding downstream 1655842 19375634 ~ 19412421 (+)
XLOC_009832 NA non-coding downstream 1661074 19380866 ~ 19381292 (+)
XLOC_009833 NA non-coding downstream 1788946 19508738 ~ 19513991 (+)
XLOC_009837 BX005389.4 non-coding downstream 1966921 19686713 ~ 19715210 (+)

Expression


Co-expression Network