G225978


Basic Information

Item Value
gene id G225978
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 1929770 ~ 1931337 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU256395
AAAACACTGAGAGGTACATTAAAGTGACAGTGTGACAATAAAGAAACAGTAGGATTGGGGTATTAATACCAGTACGGTTCCCTAATAGCCAAGTGCTAATAGCCAATATAATTACATAATTTTTGTTTTTATTACATCATTTTAGTTGAGAAGTGCTGTTTTAAATCATAGTTCACTCAACTTCAGCTATTCACAAGACAACATGTACATTTTTATCACGTAAGGCTCATGTATTATTGACAACCATGGATCATATTGTCAGAATATTTGATAAAACAAGTCAGCAGTTTTATATTACATTGTGGTTGATGTCATTTAATCATTCTTTTAACACATAATTTTCTGTTAGGTTCCATTCTATCTGAACTAAACGTGACCTGTGAGTCCGTGTGACCAAAAGCAGCAGAAACGGTTTCCGTTCACCTTTTTTTTTTTTGGTAGATTTGTTTGCATCATTTAATCTTAGTATGTTTTTTGGTACCAGCTGTTTTCCTGTTTTAAATGTTCACTGAATCACAATTAAGCTTGAATAAGCTGTTAAAAAATATGTAACATGCTAACTGAAATTGAAAGCACTTTGTAAATAAGTGGCAATTTTCCTGTAAAATGCATTTCCACTGAATTCAATGACAATATCAACTGCTTTATAATCTTTTTTCAATATACATCAAAACAACATAAGGCCTACAATATATACACACCGGATCACTTACAAAATTACAAATAGTGCAACATTCAGCGCATTAAGCACAAGTACAGTGTAACAAAGCCATCAAGCCACTGTAATGCATACTTGGACAGCAGGGCTTACAGTGCAAAACCTGAATCTAAATCTGCATGCATTGAGACAAGGCTCACACGATCACGTACGGAAAGGACAGGATCATTTTACGCATCTACTGGGTAGTTTGTGCAAACAGAATTGTGATTAGATGACACAAGGATGCTAATAAAACATGAAAACTAACAGTAATACTTTTAAGATTTGGGAGTTGATTGCACACTATCTTGACAAATGAACAAGGCTGTTTTTTCAGACTTTTTAAGAATCACATGTGCATCCATTTGTTACTGTTTTTTAGTTGAATTAAATTATTTATATACATTAAGGCAACCAAGACATCTCTTTGTGCTAAAATAATAAGAAAATATATAAATCACAAAACAGAACCATGTAATTCTCTATTATTTGTTGTTAAACTTAATTCGCCTATTTATAATTTACATCTAAAGAAATTAACATTTAAATAAATTAAACATTTAAAAGGGAATAAGGGATAGTTCACCCAAAAATGAACATTGTCATTATTTACCCTCATGTTGTTCCAAACCTGTATGACGTTTTCTTTTCTGCGCAAAACAAAGGCATTTTGATAAAATGTGGTAACCAAATAGTTTTGGTGCTCATTGACTTCCATTTTATGGACAAAAAAAATCTTATATGTTCCACAGAAGAAAGAAGCAAGTAATACAGGTTTGGAACGACATGAGGGTGAGTAAATGACAGAATTTTCAAGTTTTGGGTAAACTAACACTTTAAAGGGTTAGTTCACCCAAAAATGAAAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256395 True 1568 lncRNA 0.32 1 1929770 1931337

Neighbor

gene id symbol gene type direction distance location
CI01000053_01860130_01870321 NA coding upstream 59334 1859970 ~ 1870436 (+)
CI01000053_01790197_01796045 POU2AF1 coding upstream 132313 1789189 ~ 1797457 (+)
CI01000053_01751833_01753354 ATF5B coding upstream 176319 1751833 ~ 1753451 (+)
CI01000053_01663005_01713138 PHLDB1 coding upstream 216573 1661039 ~ 1713197 (+)
CI01000053_01649924_01653347 NA coding upstream 276229 1649924 ~ 1654260 (+)
CI01000053_01972623_01978167 TUBD1 coding downstream 41286 1972623 ~ 1978639 (+)
CI01000053_02071290_02083892 NA coding downstream 139953 2071290 ~ 2084045 (+)
CI01000053_02086227_02097758 CUL5, CUL5A, CUL5.L coding downstream 153944 2085281 ~ 2097947 (+)
CI01000053_02103844_02105757 MRPL28 coding downstream 172217 2103554 ~ 2105895 (+)
CI01000053_02118918_02119910 MOS coding downstream 187492 2118829 ~ 2120222 (+)
G225997 NA non-coding upstream 5098 1924424 ~ 1924672 (+)
G225990 NA non-coding upstream 14542 1914858 ~ 1915228 (+)
G225958 NA non-coding upstream 32701 1896861 ~ 1897069 (+)
G225957 NA non-coding upstream 39608 1889931 ~ 1890162 (+)
G225956 NA non-coding upstream 42586 1886983 ~ 1887184 (+)
G225981 NA non-coding downstream 229 1931566 ~ 1931899 (+)
G226010 NA non-coding downstream 29944 1961281 ~ 1961557 (+)
G226011 NA non-coding downstream 30703 1962040 ~ 1962368 (+)
G225973 NA non-coding downstream 50940 1982277 ~ 1982705 (+)
G226015 NA non-coding downstream 70829 2002166 ~ 2002539 (+)
G225952 NA other upstream 56475 1872874 ~ 1873295 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other downstream 661890 2592558 ~ 2595467 (+)
G226292 NA other downstream 1105265 3036602 ~ 3046783 (+)
G226347 NA other downstream 1341037 3272374 ~ 3274911 (+)
G226399 NA other downstream 1689461 3620798 ~ 3697529 (+)
G227317 NA other downstream 2483614 4414951 ~ 4415593 (+)

Expression


Co-expression Network