Gene
RNA
| Item | Value |
|---|---|
| gene id | G226553 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 1929839 ~ 1931337 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU257069 | True | 1499 | lncRNA | 0.32 | 1 | 1929839 | 1931337 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000053_01847036_01856935 | NA | coding | downstream | 72609 | 1845726 ~ 1857230 (-) |
| CI01000053_01819436_01827270 | CSGR06H11ORF53, CUNH11ORF53, C4H11ORF53 | coding | downstream | 101248 | 1818987 ~ 1828591 (-) |
| CI01000053_01759982_01765920 | NA | coding | downstream | 163755 | 1758685 ~ 1766084 (-) |
| CI01000053_01720326_01736077 | NA | coding | downstream | 193762 | 1720298 ~ 1736077 (-) |
| CI01000053_01655618_01660681 | NA | coding | downstream | 269102 | 1655548 ~ 1660737 (-) |
| CI01000053_01932882_01958701 | SNX19B | coding | upstream | 1518 | 1932855 ~ 1960172 (-) |
| CI01000053_01964024_01971099 | RPS6KB1B, RPS6KB1 | coding | upstream | 32077 | 1963414 ~ 1971099 (-) |
| CI01000053_01982526_02001150 | VMP1 | coding | upstream | 50986 | 1982302 ~ 2001150 (-) |
| CI01000053_02003828_02014352 | CLTC | coding | upstream | 71573 | 2002910 ~ 2014352 (-) |
| CI01000053_02029813_02031204 | CLTCB, CLTC | coding | upstream | 98476 | 2029813 ~ 2031790 (-) |
| G226614 | NA | non-coding | downstream | 153181 | 1776450 ~ 1776658 (-) |
| G226609 | NA | non-coding | downstream | 181752 | 1747880 ~ 1748087 (-) |
| G226606 | NA | non-coding | downstream | 187074 | 1742460 ~ 1742765 (-) |
| G226513 | NA | non-coding | downstream | 307021 | 1619936 ~ 1622818 (-) |
| G225888 | NA | non-coding | downstream | 379980 | 1549507 ~ 1549859 (-) |
| G226542 | NA | non-coding | upstream | 211 | 1931548 ~ 1931880 (-) |
| G226645 | NA | non-coding | upstream | 132073 | 2063410 ~ 2063725 (-) |
| G226647 | NA | non-coding | upstream | 137194 | 2068531 ~ 2068740 (-) |
| G226649 | NA | non-coding | upstream | 152041 | 2083378 ~ 2083915 (-) |
| G225812 | NA | other | downstream | 463107 | 1459595 ~ 1466732 (-) |
| G225574 | NA | other | downstream | 1382971 | 543647 ~ 546868 (-) |
| CI01000053_02225226_02226481 | YPELD, YPEL2B, YPEL1, YPELC, YPEL2 | other | upstream | 286111 | 2225210 ~ 2226481 (-) |
| G226826 | NA | other | upstream | 634555 | 2565892 ~ 2567072 (-) |
| G226963 | NA | other | upstream | 1065380 | 2996717 ~ 2997268 (-) |
| CI01000053_03551506_03551965 | NA | other | upstream | 1618996 | 3550333 ~ 3552847 (-) |
| G227604 | NA | other | upstream | 2155900 | 4087237 ~ 4087740 (-) |
